Table 5. Run times (in minutes) on gold standard datasets.
Algorithm | Low coverage (NA12878) | High coverage (NA12878) |
---|---|---|
CNVnator | 47 | 206 |
RDXplorer | 371 | 4378* |
GROM-RD | 112 | 149 |
Notes.
RDXplorer outputs very large files, low I/O throughput may have affected the run time for this dataset significantly.