Table 1. LincRNAs targeted by miRNAs.
| miRNA_Term | LincRNA_Term | Score a | Alignment b |
|---|---|---|---|
| csa-miR156a | CU2NC895 | 0 | miRNA: 1 GCTCACTTCTCTCTCTGTCAGA 22 |
| |||||||||||||||||||||| | |||
| lincRNA: 304 CGAGTGAAGAGAGAGACAGTCT 283 | |||
| csa-miR156b | CU2NC895 | 1 | miRNA: 1 GCTCACTTCTCTTTCTGTCAG-T 22 |
| ||||||||||||:|||||||| | | |||
| lincRNA: 304 CGAGTGAAGAGAGAGACAGTCTA 282 | |||
| csa-miR156d | CU7NC3095 | 2.5 | miRNA: 1 TGCCAGAAGAGAGTGAGCAC 20 |
| |:|||||||||||: |||| | |||
| lincRNA: 108 ATGGTCTTCTCTCTTTCGTT 89 | |||
| csa-miR159c | CU5NC2102 | 2.5 | miRNA: 1 TTTGGATTGAAGGGAGCTCT 20 |
| ||||:||||||:|||||| | |||
| lincRNA: 228 TCACCTGACTTCCTTCGAGA 209 | |||
| csa-miR162a | CU6NC2683 | 2.2 | miRNA: 1 GGAGGCAGCGGTTCATCGACC 21 |
| : | ||||:|||||||||||| | |||
| lincRNA: 142 TCGCCGTTGCCAAGTAGCTGT 122 | |||
| csa-miR166 | CU2NC947 | 0.8 | miRNA: 1 TCGGACCAGGCTTCATTC-TCG 21 |
| |||||||||||||||||| ||: | |||
| lincRNA: 275 AGCCTGGTCCGAAGTAAGGAGT 254 | |||
| csa-miR172c | CU3NC1224 | 2.5 | miRNA: 1 GAGAATCTTGATGATGCTGCA 21 |
| |||||||||||| ||| ||| | |||
| lincRNA: 246 CTCTTAGAACTAATACTTCGT 226 | |||
| csa-miR319 | CU5NC2102 | 1.5 | miRNA: 1 TTGGACTGAAGGGAGCTCCCT 21 |
| |||||||||||:||||| || | |||
| lincRNA: 227 CACCTGACTTCCTTCGAGAGA 207 | |||
| csa-miR396a | CU1NC272 | 1 | miRNA: 1 CCACAGCTTTCTTGAACTGCA 21 |
| |||||||||||||||||| | | |||
| lincRNA: 181 GGTGTCGAAAGAACTTGAATT 161 | |||
| csa-miR396b | CU1NC272 | 0.8 | miRNA: 1 GTTCAAGAAAGCTGTGGGAGA 21 |
| |:|||||||||||||||||:| | |||
| lincRNA: 102 CGAGTTCTTTCGACACCCTTT 82 | |||
| csa-miR396c | CU1NC272 | 1.8 | miRNA: 1 GTTCAATAAAGCTGTGGGAAG 21 |
| |:|||| |||||||||||||: | |||
| lincRNA: 102 CGAGTTCTTTCGACACCCTTT 82 | |||
| csa-miR396d | CU1NC272 | 0 | miRNA: 1 TTCCACAGCTTTCTTGAACTT 21 |
| ||||||||||||||||||||| | |||
| lincRNA: 183 AAGGTGTCGAAAGAACTTGAA 163 | |||
| csa-miR399a | CU5NC2035 | 0 | miRNA: 1 AGGGCTTCTCTCCATTGGCAGG 22 |
| |||||||||||||||||||||| | |||
| lincRNA: 818 TCCCGAAGAGAGGTAACCGTCC 797 | |||
| csa-miR399b | CU6NC2935 | 2 | miRNA: 1 TGCCAAAAGAGACTTGCCC 19 |
| |||||| |||||||:|| | | |||
| lincRNA: 148 ACGGTTATCTCTGAGCGTG 130 | |||
| csa-miR399b | CU5NC2035 | 2 | miRNA: 1 TGCCAAAAGAGACTTGCCC 19 |
| ||||||| |||| |||||| | |||
| lincRNA: 771 ACGGTTTCCTCTCAACGGG 753 | |||
| csa-miR399c | CU5NC2035 | 0 | miRNA: 1 TGCCAAAGGAGAGTTGCCCTT 21 |
| ||||||||||||||||||||| | |||
| lincRNA: 771 ACGGTTTCCTCTCAACGGGAA 751 | |||
| csa-miR399d | CU5NC2035 | 2 | miRNA: 1 TGCCAAAGGAGATTTGCCCGG 21 |
| |||||||||||| |||||| | |||
| lincRNA: 771 ACGGTTTCCTCTCAACGGGAA 751 | |||
| csa-miRn2–3p | CU5NC2296 | 2.5 | miRNA: 1 ATCTAACGATGTAGGAGCAAT 21 |
| || |||||||:|||:||||| | |||
| lincRNA: 210 TACATTGCTATATCTTCGTTT 190 |
a indicates the total score of the alignment.
b indicates the alignment between the miRNA and target (lincRNA).