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. Author manuscript; available in PMC: 2015 Mar 23.
Published in final edited form as: J Comput Chem. 2013 May 21;34(20):1743–1758. doi: 10.1002/jcc.23304

Table 2.

Analysis of 2SIC docking

Run Total in DOT 200,000 (best) DOT -> ASP_Elec Number in top
ACE_Elec -> ASP_Elec Number in top
2,000 100 30 (best) 2,000 100 30 (best)
Stationary = Enzyme (no Ca ions); Moving = Inhibitor Monomer
2SIC_b 98 (1440) 1 1 1 ( 26) 79 47 7 ( 7)
2SIC_u (0 bumps) 19(8114) 0 0 0 (–) 14 5 4(5)
2SIC_u (10 bumps) 0 0 0 0 (–) 0 0 0 (–)
Stationary = Inhibitor Monomer; Moving = Enzyme (no Ca ions)
2SIC_b 418 (1) 116 77 23 ( 1) 252 68 25(2)
2SIC_u (0 bumps) 61 (438) 6 6 1 ( 28) 33 13 1 ( 28)
2SIC_u (10 bumps) 246(1711) 1 1 0 ( 90) 79 3 0 ( 40)
Stationary = Inhibitor Monomer; Moving = Enzyme with 2 Ca ions
2SIC_b 392 (2) 99 78 25 ( 1) 249 68 26 ( 2)
2SIC_u (0 bumps) 59 (487) 5 5 2(19) 33 13 0 ( 38)
2SIC_u (10 bumps) 230 (1741) 1 1 0 ( 66) 97 5 3 ( 7)
Stationary = Inhibitor dimer; Moving = Enzyme with 2 Ca ions
2SIC_b 561 (18) 95 81 24(1) 402 74 24 ( 2)
2SIC_u (0 bumps) 93 (384) 4 4 4(3) 49 14 0 ( 33)
2SIC_u (10 bumps) 193 (2202) 0 0 0 (–) 176 38 17 (1)