Table 1. Feature ablation study of AMPcore on the comprehensive dataset using 10-fold cross-validation.
Features | Sensitivity | Specificity | Accuracy | MCC |
---|---|---|---|---|
All | 89.1 | 90.1 | 89.6 | 0.79 |
− Primary structures | 73.5 | 88.0 | 80.8 | 0.62 |
− Secondary structures | 88.4 | 89.1 | 88.8 | 0.78 |
− Net charges | 88.9 | 88.9 | 88.9 | 0.78 |
− Amphipathicity | 88.3 | 90.0 | 89.1 | 0.78 |
− Conserved domains | 88.4 | 89.5 | 88.9 | 0.78 |
− Aggregation | 88.9 | 89.3 | 89.1 | 0.78 |
− Gapless alignments | 89.3 | 89.6 | 89.5 | 0.79 |
− AMPA | 89.0 | 90.1 | 89.6 | 0.79 |
The symbol ‘−’ stands for “subtracting”.