Table 2. Features ablation study of AMPcore on the low similarity dataset using 10-fold cross-validation.
Features | Sensitivity | Specificity | Accuracy | MCC |
---|---|---|---|---|
All | 82.3 | 84.0 | 83.2 | 0.66 |
− Primary structures | 65.3 | 82.0 | 73.7 | 0.48 |
− Secondary structures | 81.2 | 82.0 | 81.6 | 0.63 |
− Net charges | 81.7 | 82.5 | 81.1 | 0.64 |
− Amphipathicity | 81.9 | 82.2 | 82.0 | 0.64 |
− Conserved domains | 81.9 | 82.5 | 82.2 | 0.65 |
− Aggregation | 82.2 | 83.6 | 82.9 | 0.66 |
− Gapless alignments | 82.4 | 84.0 | 83.2 | 0.66 |
− AMPA | 81.3 | 84.3 | 82.8 | 0.66 |
The symbol ‘−’ stands for “subtracting”.