Table 3. Docking scores for compounds 1 to 14 from RA1 for the proteolytic domain of Rgp and for the hemaglutinin (HA) domain and correlation of the respective docking scores for Rgp with Arg-gingipain activity as determined within the protease assay (Rgp activity at 50 μM in %, related to the untreated control groups).
Compound | Proteolytic domain | HA domain | |
---|---|---|---|
Docking score [kcal/mol) | Rgp activity [%] | Docking score [kcal/mol) | |
1 | −4,44 | 104 | −5,91 |
2 | −4,60 | 108 | −5,55 |
3 | −3,68 | n.d. | −6,73 |
4 | −4,28 | n.d. | −5,61 |
5 | −4,80 | 81 | −6,96 |
6 | −4,95 | 76 | −7,34 |
7 | −5,77 | 94 | −7,22 |
8 | −6,11 | 29 | −8,53 |
9 | −6,44 | 31 | −8,19 |
10 | −5,91 | 19 | −8,18 |
11 | −5,36 | 84 | −8,75 |
12 | −6,04 | 16 | −8,62 |
13 | −6,54 | 34 | −8,47 |
14 | −5,78 | 69 | −7,81 |