Table 3. Insertion deletion filtering pipeline.
Family | A | B | C | D | E | F | G | All |
---|---|---|---|---|---|---|---|---|
All variants found in at least one definite IA | 3316 | 2736 | 3226 | 3166 | 3396 | 2987 | 2966 | 5851 |
(1) Autosomal variants | 3264 | 2705 | 3178 | 3102 | 3345 | 2940 | 2921 | 5737 |
(2) Variants predicted to be functional | 538 | 457 | 560 | 541 | 581 | 511 | 465 | 1126 |
(3) Rare variants | 284 | 221 | 299 | 277 | 299 | 266 | 260 | 589 |
(4) Variants not found or of low frequency in the internal allele frequency database | 178 | 159 | 188 | 171 | 192 | 165 | 157 | 453 |
(5) Variants predicted damaging | 60 | 59 | 65 | 50 | 59 | 55 | 42 | 194 |
(6) Variants segregating with all definite IA in at least one family | 24 | 22 | 23 | 19 | 23 | 24 | 19 | 26 |
Variants passing visual inspection and manual review with internal database calls | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
A. Variants segregating with all IA (definite, probable, possible) or AAA in at least one family | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
B. Variants not found in unaffected individuals | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Numbers in parentheses refer to filtering steps described in the Methods. IA = intracranial aneurysm