Table 1.
Gene and genotypic frequencies (GF), Hardy–Weinberg equilibrium (HWE) and polymorphic information content (PIC) across studied genes.
| Gene/SNP | Allele | AF | G | GF | PIC | HWE | Gene/SNP | Allele | AF | Genotype | GF | PIC | HWE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DGAT Bt g.7178C > T | C | 0.64 | C/C | 0.41 | 0.35 | HWE | DGAT Bt g.11823A>C | A | 0.62 | A/A | 0.38 | 0.36 | HWE |
| T | 0.36 | C/T | 0.46 | C | 0.38 | A/C | 0.45 | ||||||
| T/T | 0.12 | C/C | 0.15 | ||||||||||
| PRL Bt g.8948A>T | A | 0.87 | A/A | 0.76 | 0.19 | HWE | PRL Bt g.9160T>G | G | 0.95 | G/G | 0.92 | 0.07 | HWE |
| T | 0.13 | A/T | 0.22 | T | 0.05 | G/T | 0.07 | ||||||
| T/T | 0.01 | T/T | 0.01 | ||||||||||
| OLR Bt g.739T>C | C | 0.06 | C/C | 0.04 | 0.10 | HWE | OLR Bt g.2831T > A | A | 0.49 | A/A | 0.23 | 0.37 | HWE |
| T | 0.94 | C/T | 0.10 | T | 0.51 | A/T | 0.51 | ||||||
| T/T | 0.89 | T/T | 0.24 | ||||||||||
| OLR Bt g.2865T > C | C | 0.53 | C/C | 0.28 | 0.37 | HWE | OLR Bt g.2859T>G | G | 0.64 | G/G | 0.40 | 0.35 | HWE |
| T | 0.47 | C/T | 0.50 | T | 0.36 | G/T | 0.45 | ||||||
| T/T | 0.21 | T/T | 0.13 | ||||||||||
| FABP3 Bt g.20539C > G | C | 0.99 | C/C | 0.99 | 0.00 | HWE | FABP3 Bt g.21314A>T | A | 0.35 | A/A | 0.14 | 0.35 | No HWE |
| G | 0.01 | C/G | 0.01 | T | 0.65 | A/T | 0.41 | ||||||
| T/T | 0.43 | ||||||||||||
| FABP3 Bt g.21321A > T | A | 0.23 | A/A | 0.04 | 0.29 | HWE | FABP3 Bt g.21364G>T | G | 0.74 | G/G | 0.53 | 0.31 | HWE |
| T | 0.77 | A/T | 0.36 | T | 0.26 | G/T | 0.40 | ||||||
| T/T | 0.58 | T/T | 0.06 | ||||||||||
| FABP Bt g.3 21395G > T | G | 0.86 | G/G | 0.74 | 0.21 | HWE | FABP3 Bt g.21485A > G | A | 0.25 | A/A | 0.04 | 0.31 | No HWE |
| T | 0.14 | G/T | 0.23 | G | 0.75 | A/G | 0.41 | ||||||
| T/T | 0.01 | G/G | 0.53 | ||||||||||
| SCAP Bt g.822A>G | A | 0.53 | A/A | 0.31 | 0.37 | No HWE | SCAP Bt g.23453C>T | C | 0.48 | C/C | 0.23 | 0.37 | HWE |
| G | 0.47 | A/G | 0.44 | T | 0.52 | C/T | 0.50 | ||||||
| G/G | 0.23 | T/T | 0.26 | ||||||||||
| SCAP Bt g.23451C>T | C | 0.14 | C/C | 0.01 | 0.20 | HWE | SCAP Bt g.23587C | C | 1.0 | C/C | 1.00 | 0.0000 | |
| T | 0.86 | C/T | 0.22 | ||||||||||
| T/T | 0.75 | ||||||||||||
| SCAP Bt g.38489A > C | A | 0.95 | A/A | 0.95 | 0.07 | No HWE | SCAP Bt g.38572C>G | C | 0.58 | C/C | 0.36 | 0.37 | No HWE |
| C | 0.05 | A/C | 0.01 | G | 0.42 | C/G | 0.44 | ||||||
| C/C | 0.03 | G/G | 0.19 | ||||||||||
| SCAP Bt g.38744C>G | C | 0.94 | C/C | 0.86 | 0.12 | HWE | SCAP Bt g.44173A>G | A | 0.21 | A/A | 0.03 | 0.28 | No HWE |
| G | 0.06 | C/G | 0.13 | G | 0.79 | A/G | 0.36 | ||||||
| G/G | 0.60 | ||||||||||||
| SCAP Bt g.39466A>G | A | 0.47 | A/A | 0.21 | 0.37 | HWE | SCAP Bt g.39887A>G | A | 0.94 | A/A | 0.87 | 0.12 | HWE |
| G | 0.53 | A/G | 0.51 | G | 0.06 | A/G | 0.12 | ||||||
| G/G | 0.27 | G/G | 0.01 | ||||||||||
| SCAP Bt g.38490A>C | A | 0.95 | A/A | 0.95 | 0.07 | No HWE | SCAP Bt g.41251A > T | A | 0.32 | A/A | 0.11 | 0.34 | HWE |
| C | 0.05 | A/C | 0.01 | T | 0.68 | A/T | 0.40 | ||||||
| C/C | 0.03 | T/T | 0.47 | ||||||||||
| SCAP Bt g.41348C>G | C | 0.23 | C/C | 0.07 | 0.30 | No HWE | SCAP Bt g.41373A>G | A | 0.43 | A/A | 0.19 | 0.36 | HWE |
| G | 0.77 | C/G | 0.31 | G | 0.57 | A/G | 0.46 | ||||||
| G/G | 0.60 | G/G | 0.34 | ||||||||||
| SCAP Bt g.g.43891G>A | A | 0.86 | A/A | 0.73 | 0.20 | HWE | SCAP Bt g.43998G > A | A | 0.29 | A/A | 0.09 | 0.32 | HWE |
| G | 0.14 | A/G | 0.25 | G | 0.71 | A/G | 0.40 | ||||||
| G/G | 0.01 | G/G | 0.50 | ||||||||||
| PPARGCA Bt g.85956C > A | A | 0.06 | A/C | 0.11 | 0.10 | HWE | PPARG Bt g.85964G>T | G | 0.34 | G/G | 0.10 | 0.35 | HWE |
| C | 0.94 | C/C | 0.88 | T | 0.66 | G/T | 0.48 | ||||||
| T/T | 0.40 | ||||||||||||
| PPARGCA Bt g.86054A>G | A | 0.31 | A/A | 0.11 | 0.33 | No HWE | PPARGCA Bt g.86060A>T | A | 0.24 | A/A | 0.06 | 0.29 | HWE |
| G | 0.69 | A/G | 0.39 | T | 0.76 | A/T | 0.33 | ||||||
| G/G | 0.49 | T/T | 0.60 | ||||||||||
| PPARGCA Bt g.T > G 86127 | G | 0.58 | G/G | 0.34 | 0.36 | HWE | PPARG Bt g.86169G>T | G | 0.54 | G/G | 0.27 | 0.37 | No HWE |
| T | 0.42 | G/T | 0.48 | T | 0.46 | G/T | 0.51 | ||||||
| T/T | 0.17 | T/T | 0.20 | ||||||||||
| SCAP Bt g.596A>C | A | 0.74 | A/A | 0.56 | 0.30 | HWE | FABP3 Bt g.21364G>T | G | 0.74 | G/G | 0.53 | 0.31 | HWE |
| C | 0.26 | A/C | 0.37 | T | 0.26 | G/T | 0.40 | ||||||
| C/C | 0.06 | T/T | 0.06 |
Bt = Bos taurus.