TABLE 1.
ChIP | No. of reads |
% aligned | % uniquea | % genome coverage | ||
---|---|---|---|---|---|---|
Total | Aligned | Unique | ||||
Input | 54,990,464 | 35,623,672 | 32,940,684 | 64.78 | 92.47 | 90.64 |
H3 | 71,828,757 | 37,798,741 | 30,151,960 | 52.62 | 79.77 | 82.96 |
H3K9me3 | 84,339,867 | 39,799,707 | 27,591,619 | 47.19 | 69.33 | 75.92 |
H3K9ac | 67,856,707 | 48,595,679 | 34,042,406 | 71.62 | 70.05 | 93.67 |
H4K5ac | 66,596,815 | 46,239,262 | 34,065,138 | 69.43 | 73.67 | 93.73 |
H4K8ac | 79,795,471 | 48,838,021 | 29,541,448 | 61.20 | 60.49 | 81.28 |
H4K12ac | 71,252,246 | 46,341,541 | 33,485,169 | 65.04 | 72.26 | 92.14 |
H4K16ac | 77,287,145 | 49,326,598 | 28,973,938 | 63.82 | 58.74 | 79.72 |
H4ac | 70,049,830 | 48,662,721 | 32,799,658 | 69.47 | 67.40 | 90.25 |
BRD4 | 84,730,635 | 47,671,985 | 24,864,246 | 56.26 | 52.16 | 68.41 |
Total aligned reads compared to uniquely mapped reads for each ChIP-seq sample.