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. 2015 Mar 21;16:94. doi: 10.1186/s12859-015-0526-z

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© Lee et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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A comparison of template-based modeling results of T0517 and T0523 by the σ _RF and σ _native values. The energy landscapes of template-based modeling results of (A) T0517 and (D) T0523 by σ _RF, σ _Modeller and σ _native. The representative structures of low and high TM-score results are superposed: (B) T0517 and (E) T0523. The average restraint energy differences, E _RF−E _native, of the mirror-image structures of (C) T0517 and (F) T0523 evaluated by σ _RF and σ _native are shown as 3D histogram plots. Positive z-axis values indicate that corresponding distance restraints are favored by σ _native and disfavored by σ _RF.