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. 2015 Mar 26;10(3):e0121415. doi: 10.1371/journal.pone.0121415

Table 1. Model validation scores of zNOD1-NACHT and zNOD2-NACHT of zebrafish.

Servers zNOD1-NACHT zNOD2-NACHT
PROCHECK Most favored regions (%) 86.40 84.30
Additionally allowed Regions (%) 9.90 9.40
Generously allowed Regions (%) 1.00 3.80
Disallowed regions (%) 2.60 2.40
Overall G-factor 0.18 0.13
Verify3D Averaged 3D-1D Score > 0.2 82.79 88.92
ERRAT Overall Quality 84.45 89.87
ProSA Z-Score −7.57 −6.26
ProQ LG score 3.16 4.63
MaxSub 0.22 0.45
MolProbity Cβ deviations >0.25Å (%) 0.31 1.32
Residues with bad bonds (%) 0.00 0.00
Residues with bad angles (%) 0.00 0.06
RESPROX Predicted resolution(Å) 2.24 2.29
VADAR Standard deviation of χ1 pooled 0.64 1.02
(Z-score) Mean H-bond energy 0.65 0.65
Generously allowed Ω angles (%) 0.52 −0.26
Packing defects (%) 1.21 0.95
Percentage of 95% buried residues 0.54 0.24
GeNMR Ramachandran outside of most favored 1.81 2.67
(Z-score) Bump score 0.34 0.34
Radius gyration score 1.33 1.40
PROSESS Deviation of Θ angles 0.86 1.07
(Z-score) χ1 score 0.42 0.12