TABLE 5.
Genes encoding archaeallar biogenesis proteins that were upregulated in F. placidus cells growing with acetate as electron donor and Fe(III) oxidea
| Locus ID | Gene product | Gene | Fold upregulated |
|---|---|---|---|
| Ferp_0061 | Type IV prepilin-like proteins leader peptide processing enzyme | flaK | NDb |
| Ferp_0252 | Type II secretion system ATPase PulE | pulE-1 | ND |
| Ferp_0253 | Type II secretion system inner membrane protein PulF | pulF | ND |
| Ferp_0283 | Twitching motility pilus retraction ATPase | pilT | ND |
| Ferp_0458 | Type IV pilin, putative (DUF1628-containing) | ND | |
| Ferp_0578 | Type II secretion system ATPase domain protein | ND | |
| Ferp_0783 | Type II secretion system ATPase domain protein | ND | |
| Ferp_0926 | DUF361 domain like pattern EppA-pilin protein | ND | |
| Ferp_1118 | Type IV pilin, DUF1628-containing | ND | |
| Ferp_1431 | Type II secretion system ATPase GspE | gspE-1 | ND |
| Ferp_1456 | Archaellin | flaB | 3.54 |
| Ferp_1457 | Archaellar accessory protein FlaC | flaC | 2.11 |
| Ferp_1458 | Archaellar accessory protein FlaD/FlaE | flaDE | 2.51 |
| Ferp_1459 | Archaellar accessory protein FlaF | flaF | 2.02 |
| Ferp_1460 | Archaellar accessory protein FlaG | flaG | ND |
| Ferp_1461 | Archaellar accessory ATPase FlaH | flaH | ND |
| Ferp_1462 | Archaellar accessory ATPase FlaI | flaI | ND |
| Ferp_1463 | Archaellar membrane protein FlaJ | flaJ | ND |
| Ferp_1533 | VirB11-like ATPase | flaI-2 | ND |
| Ferp_1554 | Type IV pilin, DUF1628-containing | 2.46 |
a
Shown are genes encoding archaeallar biogenesis proteins that were upregulated in F. placidus cells growing with acetate as the electron donor and Fe(III) oxide compared to Fe(III) citrate as the electron acceptor according to microarray analysis.
b
ND, no difference.