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. 2015 Feb 5;290(13):8331–8347. doi: 10.1074/jbc.M114.615088

TABLE 1.

Yeast strains and plasmids used in this study

Strain/Plasmids Genotype/plasmid Source
Strains
    W303-1a MATa ade2 his3 leu2 trp1 ura3 can1 Laboratory stock
    YIT2007 W303-1a xrn1Δ::kanMX Ref. 49
    YIT2013 W303-1a ski2Δ::kanMX Ref. 67
    YIT2030 W303-1a pat1Δ::natMX This study
    YIT2031 W303-1a dhh1Δ::kanMX This study
    YIT2032 W303-1a pat1Δ::natMX4, dhh1Δ::kanMX4 This study
    YIT2033 W303-1a ccr4Δ::kanMX This study
    YIT2034 W303-1a caf1Δ::kanMX This study

Plasmids
    pIT2068 pGAL1p-AUG-FLAG-MPT4ΔN-PGK1 (3UTR) URA3 CEN Ref. 49
    pIT2069 pGAL1p-AUG-FLAG-MPT4ΔN-PGK1 (3UTR)-MS2 URA3 CEN Ref. 49
    pIT2070 pGAL1p-No-AUG-FLAG-MPT4ΔN-PGK1 (3UTR) URA3 CEN Ref. 49
    pIT2071 pGAL1p-No-AUG-FLAG-MPT4ΔN-PGK1 (3UTR)-MS2 URA3 CEN Ref. 49
    pIT2082 pGAL1p-No-AUG-FLAG-MPT4ΔN-PGK1 (3UTR)-Rz URA3 CEN Ref. 49
    pIT2083 pGAL1p-No-AUG-FLAG-MPT4ΔN-PGK1 (3UTR)-MS2-Rz URA3 CEN Ref. 49
    pIT2139 pGAL1p-AUG-FLAG-MPT4ΔN-PGK1 (3UTR)-MS2-Rz URA3 CEN This study
    pIT2140 pGAL1p-AUG-FLAG-MPT4ΔN-PGK1 (3UTR)-Rz URA3 CEN This study
    pIT2141 pTEF1p-FLAG-MS2 LEU2 CEN This study
    pIT2142 pTEF1p-FLAG-MS2-zTNRC6AMid LEU2 CEN This study
    pIT2143 pGPD1p-Dhh1-HA URA3 CEN This study
    pIT2144 pGPD1p-Pat1-HA URA3 CEN This study
    pIT2145 pGPD1p-Not1-HA URA3 CEN This study
    pIT2146 pTEF1p-FLAG-MS2-dmGW182Mid LEU2 CEN This study
    pIT2147 pGPD1p-Dhh1-FLAG LEU2 CEN This study
    pIT2148 pGPD1p-Dhh1 LEU2 CEN This study
    pIT2149 pGAL1p-GFP-MS2 URA3 CEN This study
    pIT2150 pGAL1p-GFP-MS2-Rz URA3 CEN This study
    pIT2151 pGAL11p-GFP URA3 CEN This study
    pIT2152 pGAL1p-GFP-Rz URA3 CEN This study
    pIT2155 pTEF1p-FLAG-MS2-zTNRC6AMid mutants QSR and W LEU2 CEN This study
    M44 pCS2 + HA-λN-zTNRC6A-Mid-globin3UTR Ref. 40
    M277 pCS2 + HA-λN-MS2-globin 3UTR This study
    M338 pCS2 + MT-CNOT7-D40A,E42E,C67E,L71E-sv40 This study
    M342 pCS2 + MT-DCP2-E147A,E148A-sv40 This study