TABLE 1.
Primers and Probes used in this study
| Primer Name | Primer sequence (5′ - 3′) | Reference |
|---|---|---|
| RAPD Primers | ||
| 1247 | AAG AGC CCG T | (Akopyanz et al., 1992) |
| 1254 | CCG CAG CCA A | (Akopyanz et al., 1992) |
| 1281 | AAC GCG CAA C | (Akopyanz et al., 1992) |
| 1283 | GCG ATC CCC A | (Akopyanz et al., 1992) |
| 1290 | GTG GAT GCG A | (Akopyanz et al., 1992) |
| Microarray Confirmation Primers | ||
| babA-F | TCT TCA ACC ACC ATC TTC AAC AA | This study |
| babA-R | TCG TTA GGG TTT GCT CCA CAT | This study |
| babB-F | TTT GCT TGA TGT CAA AAC CAA TT | This study |
| babB-R | CCT TGG ATC GCG CTG ATT | This study |
| babA-M1R | GGC CAA AGA ATT GCT TAT AG | This study |
| babA-M1F | ATT CAA GAG CTT TCC GAT C | This study |
| babA-M2F | TAT AAT CCT GGA GTC CAA G | This study |
| babA-M3F | TCA ATT CTT GTT AGC GCA AG | This study |
| babA Sequencing Primers | ||
| LAF | ATA GCG CAG TTT TCA ATT CCT G | This study |
| LAR | AGA AAG GTT GCA TGA CAC TAT TG | This study |
| LAF1 | TGA GCT TGG CGA GTT TGA AC | This study |
| LAR1 | ACA CAC CGC TAC CGC TTA G | This study |
| 46766 | AAA GGG AGT TTC ACA AAG | This study |
| JHP0834-R | CAA TTG ACA TTG ATG CTA AC | This study |
| HypD-F | TTT TGA GCC GGT GGA TAT ATT AG | (Colbeck et al., 2006) |
| S18-F | CTT TAA TCC CCT ACA TTG TGG A | (Colbeck et al., 2006) |
| babAR1 | TTT GCC GTC TAT GGT TTG G | (Colbeck et al., 2006) |
| 1F | GCA AGG AAA TGC GCA CAC G | This study |
| 1R | CTC GTT GGG CTC ATA ACC C | This study |
| 2F | GGC ACT AAA GGC ATG CTA GG | This study |
| 2R | CCC CTA CAT TGT GGA CAG G | This study |
| 3F | GAG CCA AGC CGT TAG ACA C | This study |
| 3R | GAG CAA ACG GCT TGA CAC TC | This study |
| T7 | GGG TTT TCC CAG TCA CGA | |
| SP6 | GCA CCC CAG GCT TTA CAC | |
| J99 RT-PCR primers | ||
| 16s-RTf | TCG GAA TCA CTG GGC GTA A | This study |
| 16s-RTr | TTC TAT GGT TAA GCC ATA GGA TTT CAC | This study |
| 16s-RT Probe | TGA CTG ACT ATC CCG CCT ACG CGC T | This study |