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. 2015 Mar 27;11(3):e1005087. doi: 10.1371/journal.pgen.1005087

Fig 3. Temperature- and growth phase-responsive protein-encoding genes and trans-encoded RNAs.

Fig 3

(A) Differential expression of trans-encoded sRNAs of YPIII shown by Northern blot analyses. RNA samples were prepared from bacteria grown to exponential (exp) or stationary phase (stat) at 25°C and 37°C. sRNAs were detected by specific radioactive labeled probes. 5S rRNA served as loading control. The size marker (nt) is indicated. Venn diagrams illustrating temperature and growth phase-regulated (B) protein-encoding genes and (C) trans-encoded sRNAs in Y. pseudotuberculosis YPIII. The regulons were obtained by comparative RNA-seq using DESeq from triplicate experiments (S3 and S4 Datasets). Protein- and trans-encoded RNAs which are differentially regulated by at least 4-fold (p-value ≤0.05) are included.