Table 3.
The energies for the binding between the small molecules and A/Shanghai/1/2013 neuraminidase.
Molecules | RMSD () | (vdW + Hbond + desolv) energy (kcal/mol) | Electrostatic energy (kcal/mol) | Total internal energy (kcal/mol) | The best docking energy (kcal/mol) | Inhibition constant (nM) |
---|---|---|---|---|---|---|
Oseltamivir carboxylate | — | −4.22 | −3.94 | −9 | −6.91 | 8.59E + 03 |
Quercetin | 1.09 | −6.17 | −1.34 | −11.03 | −9.24 | 168.62 |
Chlorogenic acid | 0.83 | −6.98 | −2.42 | −12.8 | −9.82 | 63.6 |
Oleanolic acid | 0.42 | −4.36 | −4 | −10.11 | −9.51 | 106.11 |
Baicalein | 0.73 | −6.57 | −3.28 | −16.23 | −10.23 | 27.11 |