Stochastic simulations for myosin-scaffold movement along an actin network were performed in Mathematica based on the following rules (
Hariadi et al., 2014). (
A) TEM image of a keratocyte actin network (
Hariadi et al., 2014). (
B) To investigate the influence of network structure to the stepping dynamics (
Figure 5—figure supplement 2), the TEM image in (
A) was first scaled by a factor of 0.5–1.25. The image was then skeletonized to derive the position of actin filaments (green lines) as described in
Sivaramakrishnan and Spudich (2009). Every pixel is a possible binding site for a myosin motor head. (
C) Next, we calculated the orientation of each actin filament relative to the polarity field vector for each pixel in the digitalized image. A 7 × 7 box was centered over each pixel, and based on the skeletonized filament in the search box each pixel was fit to a linear function. The local filament direction was then calculated by taking the inverse tangent of this fit. Pixels that fit poorly (
< 0.25) were excluded (14% of the detected pixels in [
B]) from the simulation. The energy for each binding site was calculated from these filament directions (see
L). For our model, the myosin pair consisted of either two identical myosin dimers with lever arm stiffness
kF. Each myosin dimer has two motor domains (gray sandals), and each myosin pair is linked through their centers of mass by a linear spring
ks. Finally, in each myosin a leading (① or ②) and a trailing head is indicated. (
D) Motor 1's trailing head is placed randomly on an actin filament. (
E–
H) The position of the leading head (
E) and the second myosin (
F–
H) are randomly assigned with only two restrictions. First the inter-motor distance between myosin heads must be 36 ± 7.2 nm (gray arc; [
E and
H]). Second distance between the centers of mass of a motor pair must be 65 ± 15 nm (red ring; [
F and
H]). (
I) The position of all motor heads, the centers of mass for each myosin dimer, and the center of the two centers of mass are tracked during each simulation step. (
J) Myosin V and VI dimers step stochastically on actin filaments with exponentially distributed dwell times. In our simulations, an exponential distribution of mean dwell times based on the cycle rates of myosin V and VI (
De La Cruz et al., 1999,
De La Cruz et al., 2001) was used to derive the dwell times for each motor step. In this example,
t1>
t2 and myosin 2 moves first. (
K) For a motor to step, the trailing head of motor (motor 2) pivots about the lead head and its binding site is determined by the following criteria: (a) The binding site must be 36 ± 7.2 nm pixel from the leading head (gray arc). (b) The new center of mass for stepping motor (motor 2) must be within 65 ± 15 nm (red ring) from the center of mass of the non-stepping motor (myosin 1). (c) The stepping myosin must proceed in a forward direction determined by the actin network polarity. (
L) For each pixel meeting these requirements (
i), the energy
Gi and Boltzmann probability
Pi are calculated. (
M) A binding site for each new leading head is then stochastically choosen based on the calculated Boltzmann probabilities calculated in (
L). (
N) The change in inter-motor tension is then calculated (∆
T = ∆
Tpost − ∆
Tpre). The simulation was repeated for ≥400 times. The tension change ∆
T was quantified and presented in
Figure 5D,
Figure 5—figure supplements 2, 3.