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Assembly Statistics of de novo assemblers in O. tauri
| Assemby (kmer size) | Nb of scaffold | N50 | Size (Mb) | Nb of Aligned Scaffolds | Aligned Bases (Mb) | Ref. cov. 1 | CDS cov. 2 | Start to Stop CDS 3 |
|---|---|---|---|---|---|---|---|---|
| Velvet (41) | 2080 | 9539 | 12.3 | 2066 | 11.68 | 94 | 96 | 42 |
| ABySS (31) | 1490 | 14550 | 12.8 | 1474 | 11.87 | 95 | 98 | 43 |
| CLCbio (28) | 1402 | 14519 | 12.6 | 1394 | 11.96 | 96 | 98 | 42 |
1,2: percentage of aligned bases against the reference genome sequence and against the CDS sequences. 3: percentage of complete CDS within a single scaffold.
