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. 2015 Feb 10;167(4):1412–1429. doi: 10.1104/pp.114.252239

Table II. List of candidate genes that encode proteins predicted to localize at the chloroplast, selected from 63 genes found to be directly localized to, or be in LD with, the associated SNPs identified in the GWAS.

Gene SNP Description
AT1G21060 In LD with 7384441 Unknown protein
AT1G21065 In LD with 7384441 Unknown protein
AT1G74180 Directly localized to 27899243 Receptor-like protein14, located in chloroplast
AT1G74440 27979318; 27981096 Unknown protein
AT2G26280 Directly localized to 11189311 CID7, CTC-interacting domain7, functions in DNA binding and mismatch repair
AT3G05790 In LD with 1750265; 1750573; 1750946; 1751042 Lon-protease4, for degradation of abnormal, damaged, and unstable protein
AT3G05810 In LD with 1750265; 1750573; 1750946; 1751042 Chromatin assembly/disassembly protein
AT4G21770 In LD with 11561583 Pseudouridine synthase, involved in RNA modification
AT5G43390 Directly localized to 17424158 Uncharacterized conserved protein
AT5G64930 In LD with 25956134; 25963073; 25967700; 25968943; 25975808 Regulator of expression of pathogenesis-related genes, participates in signal transduction pathways involved in plant defense
AT5G64940 In LD with 25956134; 25963073; 25967700; 25968943; 25975808 Oxidative stress-related ABC1-like (for ATP-binding cassette) protein
AT5G65000 Directly localized to 25967700 Nucleotide-sugar transporter family protein/polynucleotidyl transferase
AT5G65020 In LD with 25956134; 25963073; 25967700; 25968943; 25975808 Annexin2, calcium-binding protein