Table 2.
Map-corrected, non-local genomic windows with significant enrichment for detected transposon insertions in unselected tissues (liver, lung, skin, spleen)
| Window coordinates | p-value | Identified by initial analysis? | # of tissues with insertions | # of strains with insertions | Gene within window | Other notes |
|---|---|---|---|---|---|---|
| chr2:81,670,001-81,690,000 | 3.39E-07 | No | 3 | 3 | ||
| chr5:28,160,001-28,180,000 | <1.00E-300 | Yes | 4 | 4 | En2 | Transposon artifact1 |
| chr5:113,680,001-113,700,000 | 7.91E-18 | Yes | 4 | 3 | 1700069L16Rik | |
| chr6:12,510,001-12,530,000 | <1.00E-300 | Yes | 4 | 4 | Thsd7a | |
| chr6:12,530,001-12,550,000 | <1.00E-300 | Yes | 4 | 4 | Thsd7a | |
| chr6:12,550,001-12,570,000 | <1.00E-300 | Yes | 4 | 3 | Thsd7a | |
| chr8:65,840,001-65,860,000 | 7.21E-11 | Yes | 4 | 3 | March1 | |
| chr10:36,800,001-36,820,000 | 3.34E-15 | Yes | 4 | 4 | Hs3st5 | |
| chr11:3,180,001-3,200,000 | 5.64E-176 | Yes | 4 | 4 | Sfi1 | Genome assembly artifact2 |
| chr11:76,780,001-76,800,000 | 3.30E-45 | Yes | 4 | 4 | Cpd | |
| chr11:79,420,001-79,440,000 | 1.88E-09 | Yes | 4 | 3 | Nf1 | |
| chr13:15,380,001-15,400,000 | 1.95E-07 | No | 4 | 4 | ||
| chr13:31,620,001-31,640,000 | 1.01E-200 | Yes | 4 | 4 | Foxf2 | Transposon artifact1 |
| chr16:28,880,001-28,900,000 | 5.71E-09 | Yes | 4 | 3 | Mb21d2 | |
| chr17:83,160,001-83,180,000 | 2.93E-08 | No | 4 | 3 | ||
| chrX:150,970,001-150,990,000 | 2.26E-07 | No | 3 | 4 | Gnl3l |
1Detected as significant due to the inclusion of En2 and Foxf2 splicing elements within the transposon structure.
2Detected as significant due to presence at a higher copy number than annotated in the reference genome.