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. Author manuscript; available in PMC: 2016 Mar 9.
Published in final edited form as: Curr Protoc Bioinformatics. 2015 Mar 9;49:8.19.1–8.19.16. doi: 10.1002/0471250953.bi0819s49

Figure 2.

Figure 2

A) Tab-separated input files required to run a first pass of MiST B) Output bait-prey matrix after the pre-processing protocol (1) that serves as input for the MiST protocol (3) C) Output of the quality control protocol depicting the number of detected proteins across replicates for a single bait. Samples AP-10 and AP-3 are candidates for removal from the data set D) Output of the quality control protocol depicting a hierarchically clustered heatmap of the pairwise sample correlation matrix. The signal from sample AP-3 is clearly uncorrelated with the VIF+ replicates while hIP34-15 correlation with the GFP group is acceptable.