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. 2014 Dec 21;32(4):928–943. doi: 10.1093/molbev/msu396

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© The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 1. — Synonymous divergence between a₁ and a₂ alleles in predicted genes in the NRRs of the mating-type chromosomes of Microbotryum lychnidis-dioicae, ranked by increasing divergence. Only trimmed alignments of concatenated exons longer than 1,000 bp were retained. Synonymous divergence was estimated as the numbers of synonymous substitutions (dS), divided by the number of synonymous sites in the sequence; standard errors are shown. A single dS value at 3.4 is not shown for optimal visualization of the other values. The divergence between the pheromone receptor alleles is not shown either as they could not be aligned in nucleotides.