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. 2015 Mar 16;7(3):1218–1237. doi: 10.3390/v7031218

Figure 6.

Figure 6

Alignment of a fragment of viral clones A56R gene nucleotide sequences with other Orthopoxvirus sequences. The sequences were obtained from GenBank and aligned using the standard parameters of CLUSTAL W. Nucleotide positions are shown according to the VACV-MARV (G1 VACV-BR isolate). (.) indicates identity and (-) indicates deletion of nucleotides. The box highlights significant variations among clones from the same sample in which the clones 1 and 5 from the VACV-BABV showed a deletion of the 18 nucleotides observed in the A56R gene sequence of G1 VACV-BR, while clones 2, 3 and 4 from the same clinical sample did not show this deletion (G2). This alignment displays only representative clones from each sample, except for VACV-BABV and VACV-GOBV, in which all clones are represented.