Table 1.

Transposable elements interrupt the genes with clear signatures of insertions in intronic regions

TE types	ch01	ch02	ch03	ch04	ch05	ch06	ch07	ch08	ch09
Copia	25	38	34	37	33	31	22	27	42
Gypsy	62	54	70	36	63	33	43	36	77
LINE	154	199	168	138	212	122	144	76	284
SINE	4	3	1	4	3	0	0	2	3
CMC-EnSpm	29	26	36	16	21	16	24	28	41
En-Spm	0	2	1	0	0	0	1	0	3
hAT-Ac	6	9	5	8	10	6	11	8	11
hAT-Tag1	2	6	4	2	4	8	2	6	6
hAT-Tip100	8	4	6	7	7	4	3	1	3
MULE-MuDR	30	34	31	23	44	28	29	12	32
PIF-Harbinger	86	103	107	55	127	52	95	42	163
TcMar-Stowaway	82	89	80	42	83	27	66	42	124
RC/Helitron	59	54	62	49	62	27	45	37	89
Tourist	3	0	1	1	1	0	0	0	1
Total	305	327	333	203	359	168	276	176	473