Table 1.
Running time of three algorithms on 10K and 20K bp resolution Hi-C data
| Algorithm | IC | IC-MES | IC-MEP | |
|---|---|---|---|---|
| 20K bp data (151 825 bins) | ||||
| #Processor | 1 | 1 | 16 | 48 |
| Memory | 86 GB | 4 GB | 1 GB | 1 GB |
| Time (gm12878) | 0:36:50 | 3:58:14 | 0:19:50 | 0:6:38 |
| Time (hESC) | 0:35:01 | 3:49:18 | 0:19:48 | 0:6:47 |
| 10K bp data (303 640 bins) | ||||
| #Processor | 1 | 1 | 16 | 48 |
| Memory | 343 GB | 32 GB | 2 GB | 2 GB |
| Time (gm12878) | NA | 47:27:32 | 4:50:03 | 0:26:02 |
| Time (hESC) | NA | 37:26:15 | 4:49:27 | 0:26:09 |
All algorithms were terminated after 10 iterations for the purpose of performance comparison, since each iteration has almost the same running time. ‘Memory’ includes only the memory allocated for computation in each processor, not system overhead. The elapsed time format is ‘hours : minutes : seconds’.