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. 2015 Mar 31;11(3):e1005110. doi: 10.1371/journal.pgen.1005110

Table 1. Mutations found in THF bypass products and in the control plasmids.

Substrate Nucleotide inserted opposite the THF Additional mutations downstream of the THF position
Type of mutation a Distance from the lesion site (nt) Position in the URA3 gene b Position in the vector c
THF C A → G - 444 4516
A C → T - 378 4450
A G → C - 368 4440
A C ins - 367 4439
A TC → AA - 24 629 4096
C T → A + 34 571 4038
T A → C + 46 559 4030
A A → C + 92 513 3984
A GAT del + 108 497 3968
A A → C + 168 437 3908
C C → T + 193 412 3883
A G → T + 213 392 3863
A G del + 338 267 3738
T G del + 341 264 3735
T A del + 498 107 3578
C G → C + 626 3450
A A del + 799 3277
T A del + 799 3277
C C → T + 980 3096
C G → C + 1064 3021
A A → T + 1397 2688
T C → T + 1405 2680
A C → T + 1529 2556
Control NA A del - 498 4575
NA C → T - 460 4537
NA C ins - 368 4445
NA T del - 325 4402
NA C → G - 221 826 4298
NA C → T - 34 639 4111
NA A → G + 236 369 3840
NA G del + 376 229 3700
NA A del + 498 107 3578
NA T → C + 610 3466
NA T del + 784 3292
NA C → T + 907 3178
NA C → T + 1012 3073
NA G → T + 1209 2876
NA C → T + 1242 2843
NA A → C + 1447 2638
NA C → T + 1621 2812

aNucleotide changes in the strand complementary to the THF-containing strand are shown.

bNumbering for the URA3 gene is from the first nucleotide of the open reading frame.

cNumbering for the vector if from the first nucleotide following the ARS4 sequence.

nt, nucleotide; del, deletion; ins, insertion; NA, not applicable.