Table II.
MASTER search times as a function of the number of disjoint fragments in the query and the number of returned matches (determined by the requested RMSD cutoff)
| Matches | Segments | ||||
|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | |
| 0–10 | 3.1–4.6 (32) | 2.5–6.3 (35) | 2.7–21 (26) | 2.7–35 (33) | 2.8–21 (31) |
| 101−102 | 3.7–4.4 (6) | 3.0–7.5 (5) | 2.9–9.4 (11) | 2.9–72 (14) | 9.5–41 (12) |
| 102−103 | 3.3–4.2 (5) | 3.0–6.4 (3) | 3.5–28 (7) | 3.4–90 (7) | 17–119 (10) |
| 103−104 | 3.2–3.8 (8) | 3.7–57 (5) | 5.0–58 (6) | 5.4–146 (4) | 90–210 (6) |
| 104−105 | 3.4–3.8 (3) | 5.2–22 (4) | 9.4–37 (6) | 41 (1) | 482 (1) |
| 105−106 | 3.8–4.8 (4) | 7.7–37 (6) | 57–103 (3) | 143 (1) | (0) |
| 106−107 | 5.5–5.7 (2) | 43–82 (2) | 162 (1) | (0) | (0) |
Ranges of times are indicated in seconds and the number of different queries in each category is shown in parentheses. Cases with average running times over 1 min are shown in gray.