Table 3.
Success rate values for SOM-BSfinder and other probe-mapping methods
| Precision | Method | Atom type | Radius (Å) | Top3 SR | Top1 SR |
|---|---|---|---|---|---|
| 25% | SOM-BSfinder | all | [0.5-0.8] | 90% | 82% |
| 25% | SOM-BSfinder | all | 1.6 | 97% | 88% |
| FTSite (∗) | all | 1.6 | 97% | 80% | |
| Q-SiteFinder | all | 1.6 | 90% | 71% | |
| 15% | SOM-BSfinder | heavy | 2.0 | 98% | 89% |
| SiteHound | heavy | 2.0 | 80-84% | – |
In the first section, SOM-BSfinder performances with its defaults parameters. In the second section, default parameters of FTSite [21,22] and Q-SiteFinder [19] were used; (*) Values for FTSite were calculated on a set of 35 targets [22]. In the last section, default parameters of SiteHound [27] were used.