Table 3. Gene expression FCs for gluconeogenesis and fructose metabolism genes.
Gene | FC Pat. 2 | FC Pat. 3 | FC Pat. 4 | FC Pat. 5 | FC Pat. 6 | FC Pat. 9 | FC Pat. 10 | FC Pat. 11 | FC Pat. 12 | Average FC | p-value (from TDSIT) |
---|---|---|---|---|---|---|---|---|---|---|---|
G6PC | −31.66 | −19.47 | −304.97 | −7.26 | −21.32 | −69.94 | −99.07 | −147.53 | −127.90 | −53.84 | 8.38E-06 |
ALDOB | −82.38 | −23.11 | −35.40 | −17.78 | −10.01 | −13.62 | −135.83 | −40.16 | −658.50 | −43.75 | 2.55E-05 |
PCK1 (1) | −11.87 | −10.50 | −15.28 | −2.88 | −13.13 | −5.94 | −4.52 | −21.55 | −1086.66 | −8.96 | 1.67E-05 |
FBP1 | −11.74 | −12.17 | −7.21 | −7.52 | −6.73 | −9.92 | −3.97 | −9.55 | −11.61 | −8.48 | 1.04E-07 |
PC | −8.81 | A/A (2) | A/A | −19.56 | −5.46 | −7.18 | A/A | −5.34 | −7.81 | −8.10 | 2.18E-05 |
PCK2 | −8.92 | −8.76 | −7.94 | −6.23 | −10.36 | −7.33 | −2.02 | −8.56 | −12.93 | −7.39 | 3.24E-06 |
KHK | −1.88 | −5.93 | −2.61 | −2.04 | −2.91 | −3.37 | −1.42 | −3.07 | −3.57 | −2.75 | 8.61E-05 |
MDH1 | −1.32 | −2.53 | −1.45 | −1.98 | −2.63 | −2.19 | −1.38 | −1.59 | −1.87 | −1.83 | 1.14E-04 |
G6PC2 | −1.61 | −1.45 | −1.20 | A/A | A/A | −1.08 | A/A | −1.37 | −1.09 | −1.29 | 1.47E-02 |
G6PC3 | −1.84 | −1.45 | −1.37 | −1.25 | −1.78 | −1.42 | 1.13 | −1.03 | 1.26 | −1.27 | 4.17E-02 |
SLC2A5 | 1.42 | 1.34 | −4.36 | 1.39 | −1.16 | 1.08 | −1.51 | −1.24 | −1.19 | −1.16 | 4.41E-01 |
The T/N value for patient 12 was not included
T/N ratio not calculated; both tumor and normal tissue calls were absent