Table 5. Number of differentially expressed genes by different statistical tests for the artificial Dataset 4, where #G up, #G down denote up-regulated and down-regulated genes, respectively.
parametric tests at 0.05 p-value cutoff | non-parametric tests at 0.05 p-value cutoff | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
t-test | Welch’s t-test | Bayes’ t-test | Pearson’s correlation | common | Limma | SAM | Wilcoxon | permute | common | |
#G up | 90 | 89 | 87 | 56 | 51 | 570 | 573 | 594 | 575 | 532 |
#G dw | 29 | 29 | 28 | 23 | 23 | 342 | 342 | 365 | 373 | 336 |