Table 5.
Number of significant epistatic interactions ( P < 10 −5 ) between each of the 28 lead SNPs and each of the other remaining 729 067 SNPs for each trait
| Trait 2 | Chromosome number and position of the 28 lead SNPs 1 | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20 | 14 | 5 | 6 | 26 | 25 | 10 | 7 | 29 | 3 | 17 | 13 | 2 | 25 | 6 | 19 | 17 | 8 | 4 | 13 | 12 | 9 | 15 | 23 | 21 | 21 | 9 | 7 | |
| 49 | 25 | 48 | 40 | 28 | 3.7 | 92 | 99 | 45 | 80 | 25 | 35 | 25 | 15 | 13 | 25 | 61 | 59 | 78 | 66 | 48 | 18 | 58 | 44 | 0.9 | 19 | 101 | 93 | |
| PW_hip | 29 | 24 | 17 | 10 | 4 | 48 | 2 | 25 | 3 | 2 | 3 | 5 | 9 | 39 | 16 | 0 | 34 | 11 | 32 | 6 | 5 | 3 | 1 | 2 | 14 | 3 | 7 | 38 |
| X_hip | 3 | 11 | 22 | 5 | 0 | 14 | 1 | 21 | 24 | 1 | 5 | 9 | 14 | 75 | 7 | 1 | 4 | 20 | 25 | 66 | 2 | 2 | 2 | 7 | 26 | 1 | 0 | 2 |
| HUMP | 0 | 13 | 0 | 201 | 14 | 20 | 6 | 22 | 15 | 0 | 1 | 6 | 0 | 0 | 1 | 8 | 0 | 14 | 28 | 0 | 0 | 24 | 0 | 0 | 1 | 0 | 1 | 1 |
| PW_lwt | 39 | 153 | 49 | 3 | 5 | 4 | 18 | 11 | 18 | 10 | 6 | 7 | 7 | 4 | 4 | 18 | 22 | 18 | 17 | 9 | 0 | 6 | 2 | 0 | 26 | 34 | 2 | 8 |
| X_lwt | 140 | 10 | 33 | 6 | 5 | 389 | 6 | 8 | 8 | 3 | 2 | 13 | 48 | 1 | 31 | 25 | 3 | 4 | 10 | 4 | 17 | 1 | 3 | 5 | 97 | 13 | 9 | 31 |
| RFI | 10 | 23 | 9 | 36 | 17 | 19 | 184 | 6 | 28 | 23 | 0 | 12 | 3 | 67 | 5 | 12 | 10 | 20 | 35 | 13 | 0 | 12 | 13 | 0 | 7 | 4 | 25 | 17 |
| PWIGF | 0 | 28 | 8 | 0 | 7 | 5 | 2 | 12 | 8 | 16 | 3 | 1 | 3 | 2 | 21 | 1 | 1 | 8 | 9 | 12 | 0 | 18 | 4 | 26 | 19 | 14 | 2 | 0 |
| CP8 | 2 | 14 | 23 | 0 | 4 | 9 | 6 | 3 | 23 | 6 | 6 | 6 | 115 | 6 | 5 | 1 | 0 | 13 | 64 | 7 | 7 | 9 | 2 | 4 | 21 | 2 | 0 | 1 |
| CRIB | 3 | 4 | 31 | 0 | 53 | 8 | 1 | 0 | 42 | 9 | 0 | 3 | 4 | 1 | 0 | 2 | 26 | 36 | 13 | 16 | 11 | 3 | 2 | 1 | 28 | 0 | 109 | 0 |
| CIMF | 57 | 6 | 36 | 0 | 71 | 0 | 2 | 1 | 0 | 15 | 49 | 20 | 3 | 34 | 1 | 41 | 21 | 24 | 0 | 0 | 48 | 6 | 111 | 6 | 13 | 30 | 12 | 113 |
| CRBY | 19 | 9 | 20 | 12 | 11 | 15 | 7 | 0 | 16 | 1 | 0 | 0 | 31 | 0 | 2 | 6 | 9 | 48 | 5 | 1 | 32 | 5 | 0 | 7 | 3 | 4 | 10 | 16 |
| LLPF | 2 | 12 | 41 | 11 | 4 | 28 | 10 | 4 | 27 | 1 | 6 | 6 | 12 | 15 | 29 | 6 | 5 | 32 | 14 | 5 | 3 | 7 | 6 | 7 | 28 | 8 | 11 | 3 |
| SC12 | 0 | 7 | 0 | 12 | 64 | 28 | 13 | 16 | 10 | 75 | 33 | 23 | 3 | 0 | 23 | 1 | 0 | 75 | 9 | 15 | 0 | 10 | 7 | 0 | 34 | 0 | 6 | 2 |
| PNS24 | 0 | 6 | 0 | 14 | 2 | 12 | 12 | 6 | 6 | 11 | 2 | 0 | 10 | 566 | 0 | 5 | 0 | 9 | 5 | 0 | 501 | 23 | 4 | 0 | 29 | 12 | 3 | 0 |
| AGECL | 1 | 13 | 11 | 35 | 1 | 2 | 29 | 3 | 0 | 1 | 4 | 5 | 3 | 4 | 0 | 0 | 3 | 13 | 2 | 83 | 31 | 3 | 0 | 0 | 0 | 1 | 5 | 18 |
| PPAI | 1 | 6 | 4 | 14 | 1 | 26 | 21 | 2 | 1 | 13 | 53 | 20 | 4 | 1 | 19 | 0 | 18 | 3 | 71 | 11 | 0 | 10 | 6 | 2 | 58 | 0 | 196 | 1 |
1Numbers in bold are chromosome numbers and numbers in italics are positions in Mb; 2trait abbreviations are in Table 1.