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. 2014 Nov 20;31(7):1067–1074. doi: 10.1093/bioinformatics/btu778

Table 2.

Frequencies of correctly identified features and average false-discovery rate over 100 simulations

Feature Band 1 network (n)
Band 2 network (n)
MSE:p^=0.8
MDP:p^=1.1
MSE:p^=0.9
MPD:p^=1.2
20 40 60 20 40 60 20 40 60 20 40 60
1 51 81 90 83 93 100 53 79 100 100 100 100
2 42 60 73 80 93 94 49 67 85 90 100 98
3 40 46 70 84 91 92 35 48 93 82 91 96
4 59 62 75 70 93 97 30 56 78 94 96 96
5 80 94 99 93 95 99 40 58 91 89 96 95
AFPR (%) 2.7 1.7 1.4 0.36 0.03 0 3.5 2.7 2.1 3.8 3.5 2.8

Notes: Only the first five features are truly differentiated.