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. 2015 Apr 2;10(4):e0122411. doi: 10.1371/journal.pone.0122411

Table 2. Oligonucleotide primers used in this study.

Sequence (5’-3’) Description
Del-traJ AAAAAAGCTTATAATTATCCTTATTGGACTTTCAAGTGCGCCCAGATAGGGTG Delete traJ in pMTL5401Fcat
Del-traJ-antisense CAGATTGTACAAATGTGGTGATAACAGATAAGTCTTTCAATTTAACTTACCTTTCTTTGT Delete traJ in pMTL5401Fcat
YZ4 TGAACGCAAGTTTCTAATTTCGATTTCCAATCGATAGAGGAAAGTGTCT Amplify IPTG cassette
YZ35 GCTGATATGGTAATGAAGGG Amplify IPTG cassette
NotI/AscI AACAGCTATGACCGGCGCGCCGCTCACTGCCCGC Change NotI site to AscI in pMTL83251-lacI
NotI/AscI-antisense GCGGGCAGTGAGCGGCGCGCCGGTCATAGCTGTT Change NotI site to AscI in pMTL83251-lacI
tcdR-F GCTATATCAAGTGCTAAAGGTC Amplify tcdR gene
tcdR-R AAAAAAGCTTATAATTATCCTTAGCGGTCCAAGACGTGCGCCCAGATAGGGTG Amplify tcdR gene
catP-INV-F1 CAGATTGTACAAATGTGGTGATAACAGATAAGTCCAAGACTCTAACTTACCTTTCTTTGT Inverse PCR [15]
catP-INV-R1 TGAACGCAAGTTTCTAATTTCGATTACCGCTCGATAGAGGAAAGTGTCT Inverse PCR[15]
catP-INV-R2 GGATCTGTAATAACCCATAAAG Sequencing of inverse PCR products[15]