Table 1. Summary of mapping results.
| Sample ID | Total reads 1 | Total base pairs 2 | Total mapped reads 3 | Perfect match 4 | < = 2 bp Mismatch 5 | Unique match 6 | Multi-position match 7 | Total unmapped reads 8 |
|---|---|---|---|---|---|---|---|---|
| Empty 9 | 7,456,236 | 365,355,564 | 6,565,172 | 5,323,902 | 1,241,270 | 5,187,188 | 1,377,984 | 891,064 |
| -100% | -100% | -88.05% | -71.40% | -16.65% | -69.57% | -18.48 | -11.95% | |
| Full 10 | 7,422,728 | 363,713,672 | 6,461,102 | 5,029,053 | 1,432,049 | 5,021,287 | 1,439,815 | 961,626 |
| -100% | -100% | -87.04% | -67.75% | -19.29% | -67.75% | -19.4 | -12.96% |
1 Total Reads: all reads included in this study.
2 Total BasePair: all nucleotides in this study.
3 Total Mapped Reads: number of reads that are similar in sequence to part of reference.
4 Perfect Match: portion of total mapped reads that can be perfectly mapped to reference.
5 < = 2 bp Mismatch: portion of total mapped reads that can be mapped to reference with < = 2 bp mismatches.
6 Unique Match: portion of total mapped reads that have only one mapped site in reference.
7 Multi-position Match: portion of total mapped reads that have multiple mapped sites in reference.
8 Total Mapped Reads: number of reads that have no similar sequences as any part of reference.
9 Empty: cDNA library generated from abortive ovules.
10 Full: cDNA library generated from developing ovules.