Table 4. The DEGs involved in abscisic acid and ethylene signal pathways.
| Gene ID | Gene length 1 | Full RPKM 2 | Empty RPKM 3 | log2Ratio 4 | Up-Down 5 | P-value 6 | FDR 7 | Annotation |
|---|---|---|---|---|---|---|---|---|
| Unigene16189_D2 | 854 | 0.01 | 3.16 | 8.30 | Up | 7.77E-05 | 8.93E-04 | ABA-responsive element binding factor |
| Unigene4733_D2 | 380 | 5.76 | 20.29 | 1.82 | Up | 5.87E-05 | 6.96E-04 | Abscisic acid receptor PYR/PYL family |
| CL7150.Contig2_D2 | 1572 | 4.56 | 14.35 | 1.65 | Up | 8.33E-11 | 2.35E-09 | Protein phosphatase 2C |
| Unigene31203_D2 | 388 | 0.51 | 9.94 | 4.28 | Up | 1.52E-05 | 2.06E-04 | Ethylene-responsive transcription factor 1 |
| Unigene15326_D2 | 573 | 0.70 | 9.76 | 3.81 | Up | 3.87E-07 | 6.97E-06 | Ethylene-responsive transcription factor 1 or 2 |
| Unigene19967_D2 | 991 | 1.00 | 9.34 | 3.22 | Up | 7.93E-10 | 2.03E-08 | Serine/threonine-protein kinase CTR1 |
| Unigene26530_D2 | 2242 | 19.99 | 72.83 | 1.87 | Up | 3.62E-81 | 8.69E-79 | Ethylene-insensitive protein 3 |
1 Gene length: length of all exons in gene.
2 Full RPKM: reads per kb per million reads of cDNA library generated from developing ovules.
3 Empty RPKM: reads per kb per million reads of cDNA library generated from abortive ovules.
4 log2Ratio (empty RPKM /full RPKM), log2 (Fold Change).
5 Up-/downregulation (empty/full): empty is up-/downregulation in empty library relative to full library.
6 P-value: p-value for hypothesis testing.
7 FDR: false discovery rate.