Table 1. Genome assembly and annotation statistics from six Magnaporthe oryzae isolates.
| 98–06 | P131 | Y34 | FJ | HN | 70–15 | ||
|---|---|---|---|---|---|---|---|
| Genome | |||||||
| Estimated genome size (Mb) | 45.3 | - | - | - | - | - | |
| Coverage (fold) | 135 a | 20 | 21 | 34 | 6 | - | |
| Number of scaffolds | 284 | 1,823 | 1,198 | - | - | - | |
| N50 scaffold length (kb) | 1530.0 | 12.3 | 11.6 | - | - | ||
| Total scaffold length (Mb) | 42.1 | 37.9 | 38.9 | 37.3 | 37.1 | 41.7 | |
| Number of contigs | 1,161 | 2,601 | 2,114 | 6,290 | 6,249 | - | |
| N50 contig length (kb) | 88.6 | 37.7 | 53.0 | 151.7 | 147.4 | - | |
| GC content (%) | 50.8 | 51.5 | 51.3 | 51.3 | 51.5 | 51.6 | |
| Repeat (%) | 9.3 | 10.3 | 10.8 | - | - | 10.6 | |
| Genes | |||||||
| Number of genes | 14,019 b | 12,722 | 12,869 | 10,453 | 10,256 | 12,440 | |
| Average gene length (bp) | 1,410 | 1,334 | 1,332 | 2,085 | 1,745 | 1,356 |
a: Four different insert size (500 bp, 350 bp, 5,000 bp, and 10,000 bp) libraries were constructed to acquire enhanced coverage.
b: Multiple software were performed to predict genes of 98–06, as distinct from only FGENESH software used for P131 and Y34. The softwares used in this study were listed in materials and methods.