Table 1. Data summary in lncRNASNP database.
| Data content | Number of records | |
|---|---|---|
| Human | Mouse | |
| lncRNA gene/transcript | 17436/32108 | 25512/36471 |
| miRNA | 2576 | 1900 |
| SNPs in lncRNA transcripts | 495729 | 777095 |
| SNPs affect MLPa (loss/gain) | 262154/280012 | 366731/357246 |
| All predicted MLP | 6413273 | 7448200 |
| Conserved MLPb | 69837 | 13780 |
| Experimental MLPc (all/loss by SNPs) | 8091/2116 | NA |
| MLP affected by SNPs (loss/gain) | 799694/830829 | 898220/864767 |
| MLP loss by SNPs with miRNA RPM>1d | 158105 | NA |
| MLP gain by SNPs with miRNA RPM>1 | 165731 | NA |
| lncRNA SNPs are GWAS tagSNPs | 142 | NA |
| lncRNA SNPs in GWAS LD regions | 197827 | NA |
aMLP means miRNA-lncRNA target pair.
bThe miRNA binding sites are existed in all the conserved exons across human, mouse, rat, and dog.
cThe miRNA–lncRNA target pairs supported by CLIP experiment results from starBase.
dThe miRNA RPM is the average value estimated from TCGA samples (9566 samples across 28 cancer types).