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. 2014 Nov 5;43(Database issue):D117–D122. doi: 10.1093/nar/gku1045

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© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 3. — Examples of input and output from the Negative Control Sequence Generator tool. (A) Form for the Negative Control Sequence Generator tool. In this example, the user has selected two proteins using the pulldown menu, but alternatively, the user can select all proteins in the database from a given species or enter the proteins he/she wants into the text area. The user has requested two sequences between 50 and 150 bp in length. The enrichment score threshold and ‘maximum number of tries’ parameter values used here are the defaults. Clicking on the ‘Help’ link in this box on the web page provides more information about the various parameters. (B) The text of an email reply containing the results from the Negative Control Sequence Generator tool for the input shown in (A).