Table 1. A basic survey for protein-coding genes of 13 species as examples of Plastid-LCGbase.
| Species | Genome length (nt) | Gene number | Strand ratio | CDPGs% | CPGs% | DPGs% | Median transcript length | Median TSS distance |
|---|---|---|---|---|---|---|---|---|
| Durinskia baltica | 116470 | 129 | 1.67 | 79.7 | 10.2 | 10.2 | 419 | 533 |
| Babesia bovis | 35107 | 32 | 33.00 | 100.0 | 0.0 | 0.0 | 581 | 592 |
| Cryptomonas paramecium | 77717 | 82 | 2.11 | 75.3 | 12.3 | 12.3 | 486.5 | 608 |
| Emiliania huxleyi | 105309 | 119 | 1.95 | 73.7 | 13.6 | 12.7 | 416 | 587 |
| Porphyra purpurea | 191028 | 209 | 1.45 | 66.8 | 16.8 | 16.3 | 518 | 580 |
| Cuscuta exaltata | 125373 | 67 | 1.65 | 71.2 | 13.6 | 15.2 | 554 | 1405 |
| Colocasia esculenta | 162424 | 86 | 1.84 | 72.9 | 12.9 | 14.1 | 546.5 | 1230 |
| Acidosasa purpurea | 139697 | 82 | 1.21 | 79.0 | 9.9 | 11.1 | 510.5 | 1040 |
| Cathaya argyrophylla | 107122 | 70 | 1.32 | 73.9 | 13.0 | 13.0 | 416 | 1143 |
| Aethionema cordifolium | 154168 | 84 | 1.77 | 72.3 | 13.3 | 14.5 | 630.5 | 1009 |
| Cicer arietinum | 125319 | 75 | 1.41 | 74.3 | 12.2 | 13.5 | 605 | 1125 |
| Gossypium anomalum | 159507 | 86 | 1.84 | 75.3 | 11.8 | 12.9 | 579.5 | 1221 |
| Allosyncarpia ternata | 159593 | 85 | 1.72 | 70.2 | 14.3 | 15.5 | 605 | 1158.5 |
| Median of 470 genomes | 154425.5 | 85 | 1.69 | 74.7 | 12.0 | 13.1 | 554 | 1087.5 |
Note: Genome length, the length of whole genome; Gene number, the number of protein-coding genes; Strand ratio, (the number of genes in dominate strand +1)/(the number of genes in the other strand +1); CDPGs%, CPGs% and DPGs% indicate the percentages of CDPGs, CPGs and DPGs among all gene pairs. Median transcript length and median TSS distance indicate the median values of transcript length and the distance between neighboring transcription start sites.