Table 1. Dataset summary.
| Cancer type | DNA methylation | Pathway activity | Copy number | Gene expression | Protein expression | Somatic mutation |
|---|---|---|---|---|---|---|
| TCGA PANCAN12 | 1 (4919) | 2 (9656) | 1 (3599) | 1 (3467) | 1 (3276) | |
| TCGA acute myeloid leukemia | 2 (388) | 2 (339) | 4 (776) | 6 (1050) | 2 (393) | |
| TCGA adrenocortical cancer | 1 (80) | 2 (156) | 4 (360) | 4 (316) | 1 (46) | 5 (454) |
| TCGA bladder urothelial carcinoma | 1 (373) | 2 (479) | 4 (1118) | 4 (1144) | 2 (254) | 3 (467) |
| TCGA brain lower grade glioma | 1 (525) | 4 (978) | 4 (1976) | 5 (2135) | 1 (260) | 7 (2068) |
| TCGA breast involve carcinoma | 2 (1182) | 4 (3095) | 4 (4194) | 5 (5325) | 2 (1156) | 4 (3224) |
| TCGA cervical & endocervical cancer | 1 (260) | 2 (365) | 4 (876) | 4 (1028) | 5 (676) | |
| TCGA colon & rectum adenocarcinoma | 2 (706) | 4 (1616) | 2 (1178) | 3 (1078) | 2 (925) | 1 (224) |
| TCGA colon adenocarcinoma | 2 (527) | 4 (1154) | 4 (1738) | 7 (1818) | 2 (665) | 2 (270) |
| TCGA diffuse large B-cell lymphoma | 1 (48) | 2 (56) | 4 (142) | 4 (112) | ||
| TCGA esophageal carcinoma | 1 (202) | 2 (140) | 4 (556) | 2 (274) | ||
| TCGA glioblastoma multiforme | 2 (432) | 4 (1336) | 4 (2316) | 7 (1812) | 2 (429) | 2 (582) |
| TCGA head & neck squamous cell carcinoma | 1 (580) | 2 (990) | 4 (2046) | 4 (2164) | 2 (424) | 2 (815) |
| TCGA kidney chromophobe | 1 (66) | 2 (132) | 4 (264) | 4 (364) | 2 (131) | |
| TCGA kidney clear cell carcinoma | 2 (898) | 4 (1170) | 4 (2082) | 5 (2488) | 2 (908) | 2 (630) |
| TCGA kidney papillary cell carcinoma | 2 (292) | 4 (427) | 4 (876) | 5 (1048) | 6 (885) | |
| TCGA liver hepatocellular carcinoma | 1 (307) | 2 (378) | 4 (932) | 4 (1048) | 5 (1008) | |
| TCGA lung adenocarcinoma | 2 (633) | 4 (1038) | 4 (1978) | 5 (2225) | 2 (474) | 2 (773) |
| TCGA lung cancer | 2 (1197) | 2 (1966) | 3 (2364) | 1 (432) | 1 (408) | |
| TCGA lung squamous cell carcinoma | 2 (564) | 4(1283) | 4 (1964) | 6 (2448) | 2 (390) | 3 (532) |
| TCGA mesothelioma | 1 (37) | 4 (148) | 4 (144) | |||
| TCGA ovarian serous cystadenocarcinoma | 1 (616) | 4 (1645) | 4 (2322) | 9 (3096) | 2 (824) | 5 (870) |
| TCGA pancreatic adenocarcinoma | 1 (156) | 2 (169) | 4 (442) | 4 (512) | 1 (106) | 2 (118) |
| TCGA pheochromocytoma & paraganglioma | 1 (187) | 4 (672) | 4 (748) | 5 (919) | ||
| TCGA Prostate adenocarcinoma | 1 (385) | 2 (663) | 4 (1502) | 4 (1884) | 1 (164) | 5 (1163) |
| TCGA rectum adenocarcinoma | 2 (179) | 4 (462) | 4 (650) | 7 (620) | 2 (260) | 2 (116) |
| TCGA sarcoma | 1 (249) | 2 (206) | 4 (732) | 4 (688) | ||
| TCGA skin cutaneous melanoma | 1 (418) | 4 (1372) | 4 (1544) | 1 (205) | 5 (1654) | |
| TCGA stomach adenocarcinoma | 2 (482) | 2 (546) | 4 (1516) | 4 (698) | 1 (268) | 6 (1652) |
| TCGA thyroid carcinoma | 1 (571) | 2 (986) | 4 (1998) | 4 (2260) | 1 (374) | 3 (1156) |
| TCGA uterine carcinosarcoma | 1 (57) | 2 (113) | 4 (224) | 4 (228) | 5 (284) | |
| TCGA uterine corpus endometrioid carcinoma | 2 (596) | 4 (1153) | 4 (2122) | 7 (1548) | 2 (604) | 3 (690) |
| TCGA uveal melanoma | 1 (80) | |||||
| Cancer Cell Line Encyclopedia | 1 (972) | 2 (1934) | ||||
| Connectivity map | 1 (6100) | |||||
| Childhood cancer | 2 (257) | 4 (633) | ||||
| SU2C breast cell line | 2 (92) | 1 (54) | ||||
| Other datasets from literature | 17 (2002) | 18 (3349) |
Number of datasets by cancer type and data type; number of samples is in parenthesis.