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Chromosome arm scaffolds
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| X |
23 542 271 |
4 |
65 520 |
6 |
AE014298.5 |
• Net gain of 0.9 Mb compared to R5 X plus R5 XHet: most at scaffold end. |
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NC_004354.4 |
• Central 15.4 Mb unchanged: |
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R5:X:4,684,794..20,073,489 maps to R6:X:4,790,761..20,179,456. |
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• About 104 kb of new sequence added at scaffold start (14 kb from R5 U). |
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• 1 Mb of new sequence added near scaffold end, including 209 kb and 204 kb from R5 scaffolds U and XHet, respectively. |
| 2L |
23 513 712 |
0 |
0 |
2 |
AE014134.6 |
• Net gain of 133 kb compared to R5 2L plus R5 2LHet: all at scaffold end. |
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NT_033779.5 |
• Initial 21.5 Mb unchanged: |
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R5:2L:1..21,485,538 maps to R6:2L:1..21,485,538. |
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• New sequence at the end includes 293 kb and 40 kb from R5 scaffolds 2LHet and U, respectively. |
| 2R |
25 286 936 |
1 |
6600 |
7 |
AE013599.5 |
• Net gain of 0.9 Mb compared to R5 2R plus R5 2RHet: most at scaffold start. |
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NT_033778.4 |
• Central 16.7 Mb unchanged: |
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R5:2R:3,036..16,668,212 maps to R6:2R:4,115,531..20,780,707. |
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• New sequence at the start includes 2.3 Mb and 987 kb from R5 scaffolds 2RHet and U, respectively. |
| 3L |
28 110 227 |
4 |
117 660 |
5 |
AE014296.5 |
• Net gain of 1.0 Mb compared to R5 3L plus R5 3L Het: all at scaffold end. |
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NT_037436.4 |
• Initial 24.5 Mb unchanged, except an unsized gap is now sized at 7kb: |
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R5:3L:1..24,523,740 maps to R6:3L:1..24,530,640. |
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• New sequence at the end includes 2.3 Mb, 328 kb and 150 kb from R5 scaffolds 3LHet, 2RHet and U, respectively. |
| 3R |
32 079 331 |
9 |
22 772 |
18 |
AE014297.3 |
• Net gain of 1.7 Mb compared to R5 3R plus R5 3RHet: all at scaffold start. |
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NT_033777.3 |
• Last 27.9 Mb of unchanged: |
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R5:3R:1..27,905,053 maps to R6:3R:4,174,278..32,079,331. |
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• New sequence at the end includes 2.2 Mb and 1.0 Mb from R5 scaffolds 3RHet and U, respectively. |
| 4 |
1 348 131 |
1 |
17 000 |
0 |
AE014135.4 |
• Net loss of 3.7 kb compared to R5 scaffold 4. |
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NC_004353.4 |
• Replacement of R5 scaffold start: |
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24.1 kb of sequence removed (some moved to R6 3R, X and Y) and replaced with 3.4 kb from the R5 scaffold U. |
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• Change in start of R6 scaffold 4 completes the JYalpha gene annotation. |
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• The remaining sequence is unchanged, but the unsized gap in R5 is now sized at 17kb. |
| Y |
3 667 352 |
61 |
242 633 |
150 |
CP007106.1 |
• Net gain of 3.3 Mb compared to R5 YHet: over a 10-fold increase. |
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NC_024512.1 |
• 232.3 kb carried over from R5 scaffold YHet. |
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• New sequence includes 702.5 kb and 84.2 kb from R5 scaffolds U and 3LHet, respectively. |
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Mitochondrial scaffold
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| M |
19 524 |
0 |
0 |
0 |
KJ947872.2 |
• Derived from iso-1 reference strain. |
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NC_024511.2 |
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Minor unordered scaffold groups (number of scaffolds per group)
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Comments on scaffold group |
| X (446) |
1 005 345 |
26 |
72 915 |
0 |
• Chromosome X mapped. |
| 2CEN (28) |
222 873 |
20 |
60 073 |
1 |
• Chromosome 2 centromere-proximal region. |
| 3CEN (144) |
729 966 |
26 |
41 429 |
10 |
• Chromosome 3 centromere-proximal region. |
| Y (199) |
860 223 |
39 |
63 081 |
24 |
• Chromosome Y mapped. |
| XY (66) |
209 541 |
4 |
806 |
1 |
• Scaffolds map to both X and Y chromosomes. |
| rDNA (1) |
76 973 |
2 |
16 500 |
0 |
• Ribosomal DNA (RefSeq, NW_007931121.1). |
| unmapped (978) |
3 053 597 |
139 |
402 989 |
11 |
• Unmapped. Now represented by separate scaffolds instead of a concatenated pseudoscaffold. |
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• Net loss of 7.0 Mb, compared to R5 U, due to movement of sequences to chromosome arms or to mapped minor scaffold groups. |
