| Genomics |
Genes |
For annotated genes, identifiers, description, genomic localization, sequence, promoter and the encoded protein sequence are shown |
|
Homology |
Identification of orthologs using a reciprocal BLAST search against the UniProt (3) |
|
Gene essentiality |
Essentiality of annotated genes and non-coding genomic sections based on combining theoretical coding capabilities and the experimental analysis of a comprehensive mutant library |
|
Operons |
Estimation of operons based on combining information from microarray and tiling array experiments |
| Transcriptomics |
Microarrays |
Gene expression along the growth curve determined by microarrays. A tool for the generation of gene expression plots is embedded |
|
RNAseq |
RNA sequencing results from different time points |
| Proteomics |
Proteins |
For annotated proteins, internal and external identifiers, biochemical properties, structure predictions and functional features are displayed |
|
Pfam domains |
Determination of Pfam domains applying InterProScan to the protein sequences (E-value < 0.09) |
|
Complexes |
Identification of protein complexes based on Tandem Affinity Purification-Mass Spectrometry (TAP-MS) and on molecular weight exclusion/MS |
|
Peptides |
Quantitative mass spectrometry results for different growth conditions |
| Metabolomics |
Metabolic reactions |
Metabolic reconstruction resulting from the combination of genomic and experimental data, literature mining, sequence analysis and metabolic modeling |
|
Growth curves |
Metabolite measurements along the growth curve under various conditions and medium compositions |
|
Metabolites |
Metabolites identified by GC-MS, LC-MS or NMR |
