Table 2. Data files available from the wwPDB and RCSB PDB ftp sites for download.
Resource | Description | URL |
---|---|---|
PDB Archive | PDB structure data, structure factor files, NMR restraint files, NMR chemical shift files, validation reports; Chemical Component Dictionary, BIRD dictionary | ftp://ftp.wwpdb.org/ |
Data mirrors: | ||
ftp://ftp.ebi.ac.uk/pub/databases/pdb/ | ||
ftp://ftp.pdbj.org/pub/pdb/ | ||
PDB Archive/EM | EM maps associated with EM structures in the PDB | ftp://ftp.wwpdb.org/pub/emdb/ |
Sequence Clusters | Grouped PDB protein sequences clustered from 30% to 100% sequence identity | ftp://resources.rcsb.org/sequence/clusters/ |
Structures determined by multiple methods | Clusters of structures determined by multiple methods (57) | ftp://resources.rcsb.org/sequence/clusters/ |