Table 1. MethBank data content and statistics as of 1 July 2014.
| Data content | Data statistics |
|---|---|
| Methylation data (WGBSa) | |
| Sperm (zebrafish) | 20 606 757 CpG sites |
| Oocyte (zebrafish) | 20 987 274 CpG sites |
| 16-Cell (zebrafish) | 18 948 935 CpG sites |
| 32-Cell (zebrafish) | 20 825 693 CpG sites |
| 64-Cell (zebrafish) | 17 836 722 CpG sites |
| 128-Cell (zebrafish) | 19 889 625 CpG sites |
| 1k-Cell (zebrafish) | 20 815 960 CpG sites |
| Germ-ring (zebrafish) | 19 258 632 CpG sites |
| Testis (zebrafish) | 20 095 377 CpG sites |
| Sperm (mouse) | 19 455 209 CpG sites |
| Oocyte (mouse) | 19 100 312 CpG sites |
| 2-Cell (mouse) | 19 844 915 CpG sites |
| 4-Cell (mouse) | 19 637 338 CpG sites |
| E7.5 (mouse) | 19 644 831 CpG sites |
| ICM (mouse) | 19 523 556 CpG sites |
| E13.5 female (mouse) | 19 253 566 CpG sites |
| E13.5 male (mouse) | 19 352 586 CpG sites |
| SNPb d ata | |
| TU female (zebrafish) | 3 653 795 SNPs |
| TL male (zebrafish) | 3 423 892 SNPs |
| Mouse | 2 561 574 SNPs |
| Gene expres sion data | |
| Sperm (zebrafish) | 13 529 genes |
| Oocyte (zebrafish) | 11 191 genes |
| 1k-Cell (zebrafish) | 12 168 genes |
| Germ-ring (zebrafish) | 12 129 genes |
| Oocyte (mouse) | 18 259 genes |
| CpG island data | |
| Zebrafish | 8768 CpG islands |
| Mouse | 37 730 CpG islands |
| DMRc d ata | |
| Sperm versus oocyte (zebrafish) | 53 680 DMRs |
| 1k-cell versus oocyte (zebrafish) | 51 886 DMRs |
| 1k-cell versus germ-ring (zebrafish) | 95 DMRs |
| Germ-ring versus oocyte (zebrafish) | 36 004 DMRs |
| Sperm versus oocyte (mouse) | 2000 DMRs |
aWGBS: whole-genome bisulfate sequencing.
bSNP: single nucleotide polymorphism.
cDMR: differentially methylated region.