Table 10.
Paired | Unpaired | Total | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AU | GC | GU | A | C | G | U | A | C | G | U | |||
Natural | 0.39 | 0.49 | 0.12 | 0.38 | 0.19 | 0.17 | 0.26 | 0.27 | 0.22 | 0.25 | 0.26 | ||
ERD | 0.31 | 0.62 | 0.07 | 0.41 | 0.19 | 0.17 | 0.23 | 0.26 | 0.26 | 0.27 | 0.21 | ||
INFO-RNA | 0.05 | 0.90 | 0.05 | 0.37 | 0.20 | 0.28 | 0.15 | 0.15 | 0.36 | 0.40 | 0.09 | ||
MODENA | 0.13 | 0.83 | 0.04 | 0.83 | 0.07 | 0.05 | 0.06 | 0.37 | 0.28 | 0.28 | 0.07 | ||
NUPACK | 0.28 | 0.72 | 0.01 | 0.39 | 0.22 | 0.14 | 0.24 | 0.24 | 0.31 | 0.27 | 0.18 | ||
RNAifold | 0.07 | 0.92 | 0.02 | 0.90 | 0.03 | 0.04 | 0.03 | 0.39 | 0.27 | 0.29 | 0.04 |
The distribution of nucleotides in paired and unpaired regions are calculated for all existing approaches. Also, the total distribution of nucleotides is presented. The closest values to the natural ones are indicated in bold face.