Table 1.
Phage associated regions identified by PHAST
| Strain | Region | Concatenated 1 Boundaries (bp) | Size (kb) | Ordered scaffold numbers | PHAST Annotation | Annotation Identity 2 (Phage Identity 3 ) | PHAST Prediction 4 |
|---|---|---|---|---|---|---|---|
| E. coli O157 SvETEC | S1 | 1316571-1334538 | 17.9 | 83, 114, 2 | Stx2 converting I NC_003525 | 24% (92%) | Incomplete |
| S2 | 2204749-2280987 | 76.2 | 59, 58, 107, 53, 39 | mEp460 NC_019716 | 22% (90%) | Intact | |
| S3 | 2966791-2982739 | 15.9 | 32, 81, 1 | P1 NC_005856 | 50% (85.7%) | Incomplete | |
| S4 | 3287635-3331585 | 43.9 | 1, 11 | TL 2011b NC_019445 | 78.57% (98.2%) | Intact | |
| S5 | 3449037-3477233 | 28.1 | 44, 70, 14 | P1 NC_005856 | 39.39% (84.8%) | Incomplete | |
| S6 | 4542510-4561835 | 19.3 | 31 | APSE 2 NC_011551 | 15.78% (47.3%) | Incomplete | |
| E. coli O157:K88 734/3 | K1 | 1322304-1357135 | 34.8 | 67, 55, 141, 6 | lambda NC_001416 | 54.76% (97.6%) | Intact |
| K2 | 1555282-1584506 | 29.2 | 34, 83, 58 | Fels 2 NC_010463 | 57.14% (100%) | Incomplete | |
| K3 | 1810316-1849764 | 39.4 | 19, 41 | mEp460 NC_019716 | 17.94% (92.3%) | Intact | |
| K4 | 2254746-2314331 | 59.5 | 54, 65, 94, 98, 132, 136, 38 | mEp460 NC_019716 | 29.11% (92.4%) | Intact | |
| K5 | 3315282-3359241 | 43.9 | 2, 23 | TL 2011b NC_019445 | 78.18% (98.1%) | Intact | |
| K6 | 3476711-3497698 | 20.9 | 30 | Fels 2 NC_010463 | 86.2% (100%) | Intact | |
| K7 | 4558357-4577682 | 19.3 | 7 | APSE 2 NC_011551 | 15% (45%) | Incomplete |
1Identified regions were generally over multiple scaffolds but were identified as concatenated sequence. 2Percent identity of the region compared to the PHAST annotation. 3Percentage of identified ORFs that encode phage or hypothetical genes. 4PHASTs prediction of whether each prophage encodes the genes necessary for lysogeny.