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. Author manuscript; available in PMC: 2015 Nov 1.
Published in final edited form as: Proteomics. 2014 Sep 23;14(0):2389–2399. doi: 10.1002/pmic.201400080

Figure 2.

Figure 2

A and B. Graphical representation of how the concepts defined in Figure 1 map onto an mzIdentML file, following the recommendations presented in this manuscript. Each <ProteinDetectionHypothesis> has references back to all peptide spectrum matches (PSMs) on which the protein identifications are based (not shown – consult [19] for more details).