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. Author manuscript; available in PMC: 2015 Nov 1.
Published in final edited form as: Proteomics. 2014 Sep 23;14(0):2389–2399. doi: 10.1002/pmic.201400080

Figure 3.

Figure 3

A snippet of mzIdentML showing a <ProteinAmbiguityGroup> (lines 5038 to 5095) containing four <ProteinDetectionHypothesis> elements (two minimised on lines 5068 and 5080). In this example, the first PDH (lines 5039-5055) has been flagged as both a “leading protein” and “group representative” (lines 5051 and 5052). The second PDH (lines 5056-5067) has been assigned as a “non-leading protein” (line 5066) and a “sequence sub-set protein” (line 5065). CV terms assigned to the PAG-level are on lines 5092-5094, including the mandatory term “protein group passes threshold” (line 5092).