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. Author manuscript; available in PMC: 2015 Sep 12.
Published in final edited form as: Nature. 2015 Feb 18;519(7542):199–202. doi: 10.1038/nature14245

Extended Data Table 2.

Mass spectrometry analysis of proteins purified through Ni-NTA shown in Extended Data Fig. 4a.

Figure Spacer Sequence PAM Target
2b 1 gcaacaatgggaaccaagctatgttgatag aGGgt phage
1st logo 2 gagaacaaaaccatcctacccggtaataaa tGGta phage
3 aatagagatactttatctaacatgatacac gGGag phage
4 ccattttagatttcaaaagtttagtatctat aGGca phage
5 agtattggaatctgatgaatattcatctct cGGta phage
6 agaaaatttatacattgattattcaccaac aGGca phage
7 acatactccaaacaattgatggatttgtgt aGGtg phage
8 gctaagactgtgaagcataatactgctact aGGta phage
9 ttttaagctattcattttaaaaggtcatat gGGca phage
10 acttatgccgtttctatacttcactacagca tGGtc phage
11 atgaatggattgaagagaacacagacgaac aGGac phage
12 ccacaaatagaaatagagctagggagtttaa cGGta phage
13 attagttactccacaaatagaaatagagct aGGga phage
14 ggagtaactaatatctgaattgttatcagt tGGtt phage
15 tagttttttgagtatgcttactttttcttg tGGtt phage
16 tgaacgaattgtcagtatgtacagattaat aGGaa phage
17 cattacggacgtagtagaagcaattagaaa tGGaa phage
18 tggatatgacgaccaagatttagcgtttta aGGtg phage
19 cgacataacgctaatacatgtttgtcatag tGGtt phage
20 acaaacttaacaatagtggttttttcaaga gGGag phage

2b 1 agagtacaatattgtcctcattggagacac tGGgG phage
2nd logo 2 tgtttgggaaaccgcagtagccatgattaa gGGtG phage
3 ctcatattcgttagttgcttttgtcataaa aGGtG phage
4 tttatgtctatatactcaaagtaatcatttt cGGaG phage
5 taatatcaacggtatgtgggtgtctggtga cGGtG phage
6 aataagtctaaaaaaccaacgtttaatgat tGGgG phage
7 gttgatattacgttcatagaacatacctga tGGtG phage
8 tcaatgtttggtacaagttggtcacagata tGGaG phage
9 ttagttactccacaaatagaaatagagcta gGGaG phage
10 caattgtttttcttggaaatcatatttata cGGcG phage
11 tatctaagtttgccaattattacattaaagc tGGtG phage
12 taggacatagagatgaaaaaacgactataa aGGtG phage
13 tgaagaaatgattcaagaaacacaaaagag tGGcG phage
14 tcggactgttagggtacgcgaagggcaaaa aGGaG phage
15 aatactttcttctaaaaaacctaagtcaac aGGaG phage
16 taatccaattacaacattaaaaattaatga cGGaG phage
17 acaatgttaagcaaccagcacattacacata cGGcG phage
18 ggattttaaaataaaagtaaatgttgatac tGGcG phage
19 caggcaatgttattttatcggattttaaaaa cGGcG phage
20 agaatctttattattagctgacttacaaga aGGtG phage
21 aaaaccccaatatcttttaaaaataaagtt aGGtG phage
22 tagggcaatgattgaagaatttgatgataa cGGaG phage

2b 1 aaaggcaacatatttgaatcatcacatttat tGGaG phage
3rd logo 2 ttggaatggaattaaacaataaaactttta tGGaG phage
3 atattcatcagattccaatactacgttaat aGGtG phage
4 acaatttaaaaattagaaatgtaaatgtag aGGtG phage
5 cagaatgaactatgaaacaggggtccaact aGGtG phage
6 acataacatcaaaaccctttctgaagaaat tGGtG phage
7 taagttgtttgaaatgtacgagatggaagg aGGaG phage
8 atacgtgtaaagacatattagatcgagtca aGGaG phage
9 tgtgcaggagctacgttcaataaatgtgaa aGGaG phage
10 ttaagaaagttattgtcatcgagcttaaat tGGtG phage
11 acacacatactaaacctgaacgattaagga gGGgG phage
12 tttaccaacatccttagttgatagattttt aGGcG phage
13 gtttgaatacgttccgtttctgatacccagt aGGcG phage
14 aagttaaaaagaatttaaagtcaagaagta tGGgG phage
15 attctcagaagatagcgaagatgggagaaa aGGaG phage
16 tgagcgactgctgggtgtgcttcgaatagtt tGGcG phage
17 taatatatgctcatacttaattgaattgtc tGGtG phage
18 atcttcttttttaatacgtccatcaacaag cGGtG phage
19 cgatattggcggtgtgaataataactttaa aGGaG phage
20 caacgagctggcaacaacataagatgacag aGGcG phage

2b 1 taaactactacgacttaagcaggtgccata tGGca phage
4th logo 2 gacaaatgctattcaacattcagttaaaga aGGta phage
3 acaattattaattgaacaagcgcaagctaa cGGct phage
4 cacatcaattagtaagacgccaaaagtaac aGGta phage
5 aaacgatgagtacacaaaatacaaaatcta cGGca phage
6 gtaataatatttttaataacctcaacatct tGGtc phage
7 tcatgaaaaagtgaattgctagtagtgtgt tGGtc phage
8 tacgctatcgcaaaagcagtcaaagctaaa gGGca phage
9 agggaatcttacagttattaaataactatt tGGat phage
10 aaaacgagcaaattaagtggtacgtagaca aGGgt phage
11 ctaaatgttgccatttcgttatctcctttc tGGta phage
12 actggatgacattgaacaaagcaccgaata tGGcc phage
13 taaatatttgataacaacattatacacgaa aGGag phage
14 cacatcaattagtaagacgccaaaagtaac aGGta phage
15 aaggtgatgacggcgaatggtacacaacata tGGtc phage
16 taacgacggtacttattccgtcgttgctac tGGtg phage
17 ataaataaaaaagttactactcacacacta aGGca phage
18 tctaggttcgaactcttctttaaatttaat aGGca phage
19 ctcatcaatatcattctgattggttatttt gGGat phage
20 tctctttgataaataactttatccacataa aGGtg phage
21 ttagacttttactttccattacttaaatca tGGtc phage
22 aatttgttcttgcgcttcaatagtgatagt aGGgt phage
23 ataagtctaaaaaaccaacgtttaatgatt gGGga phage

2d 1 acatgttatgcatatcgtaagtgaagtcac aGGta chromosome
1st logo 2 agatcaaattgtaacaactaatcctattgc aGGta chromosome
3 gtttcagcaatatatctcttagtgcatcac cGGtt chromosome
4 tacaatgtaggctgctctacacctagcttc tGGgc pRH223
5 tttgattacaatggcacatgtacttatgcc tGGat chromosome
6 catttgtcttagcacatgaattaggtcatgc aGGtc chromosome
7 catgattgcacccattgttgcacctagtac aGGtt chromosome
8 taccaataacttaagggtaactagcctcgc cGGca chromosome
9 gagtatgtttgcgcgtgaagtggttgtgtc tGGat pRH223
10 agaatggttagatttatggcgtgatgtaac gGGca chromosome
11 ctgcttccatgataactggaccatcagcaac cGGat chromosome
12 gattgaagctacaatacctgatgttgctgc gGGaa chromosome
13 cgaaatacttggctaagcacgacgaggcct tGGtg pRH223/240
14 gctctacacctagcttctgggcgagtttac gGGtt pRH223
15 atatggaagttacattttttggaacgagtgc aGGtt chromosome
16 ttatgaagcgttacgtcaacaagattttcc aGGat chromosome
17 ttatcgaagtatacgagttcacagaagaac aGGct chromosome
18 ccagttcttgttgttttggtgctttagtca aGGtt chromosome
19 tggatgatcttgtctttcatgtgtacctgt tGGaa chromosome
20 caggatttagttttcctagcggtcatgcta tGGga chromosome

2d 1 ttgactatcaaatgtctttttcaatgtttc gGGtG chromosome
2nd logo 2 atccgttctgcagaagagattgtttcttgc aGGcG pRH223
3 tgaacatttcgattatgtattaatgagtgc tGGtG chromosome
4 catctttaggacgaatgccagcacgttctgc tGGaG chromosome
5 caccatgttaaaaatacctccatcatcacc aGGaG pRH223/240
6 tcgtgagacagttcggtccctatccgtcgt gGGcG chromosome
7 tttgcgcagtcggcttaaaccagttttcgc tGGtG pRH223
8 aaagaagtcataagtaccatgacttgagtt tGGtG chromosome
9 ctaatttttcttcttcaacaccatctatggc tGGcG chromosome
10 ccaagtattcaaagttggaacgggtggtct aGGtG chromosome
11 atccgttctgcagaagagattgtttcttgc aGGcG pRH223
12 tttgcgcagtcggcttaaaccagttttcgc tGGtG pRH223
13 aacgcgtatacatagcaagcgttctcatgt tGGaG chromosome
14 agtttgggagtcaattatcggctttttaac tGGcG chromosome

3d 1 tgacttctctgaagagccatctttttgcact tGGaa chromosome
1st logo 2 ggtcagatgcaattcgacatgtggacggac tGGtt pRH223
3 atcttttctagcttttctccaagcacagac aGGac chromosome
4 gttggtctaattgtttcaatagttccacct tGGtc chromosome
5 tgccggttggggtggctgagacggcaccct aGGaa chromosome
6 tgagtatgtttgcgcgtgaagtggttgtgtc tGGat pRH223
7 ttgagttagaaaacggtcgtaaacggatgc tGGct pRH242
8 agtttgggagtcaattatcggctttttaac tGGcg chromosome
9 aattaagaaatcttctaaccaactgattgc tGGaa chromosome
10 aacagaaagaataggaaggtatccgactgc tGGta pRH223/240
11 tggtattgtaggcgttattttaggtattcc gGGat chromosome
12 aaatctcagcaggacaagctggtacaggtgc tGGtt chromosome
13 ctcaagagatttggagcatccaatcaatgc aGGtc pRH223
14 ctaaggtggcaccacggtaacgcgtccttac aGGta chromosome
15 tgattaaacttaaaaatgtattacctagtgc aGGta chromosome
16 atttgagtcagctaggaggtgactgatggc tGGtt pRH223
17 ataagagaagatgctagacgtataagttcac tGGtc chromosome
18 acgttttatctgtatttgcgacaatcgttg gGGta chromosome
19 ataacatacgccgagttatcacataaaagc gGGaa pRH223
20 gcattttaaacaaaaaaagatagacagcac tGGca pRH223
21 aatcccagttagaacaaacgctaaaatggc gGGcc chromosome
22 taccaataacttaagggtaactagcctcgc cGGca chromosome

3d 1 gaagtctagctgagacaaatagtgcgatta caaaa pRH223/240
2nd logo 2 agcatagctctaaaacctcgtagactattt ttgtc pRH223/240
3 aaattttttagacaaaaatagtctacgag gtttt pRH223/240
4 aagtcgaacttcataatcatcgctttcgg catat chromosome
5 ccaatttctacagacaatgcaagttggggt gtggg chromosome
6 gttatttctgaaatgcccgttacatcacgc cataa pRH243
7 tgtttgccctccaaatatgaaaacatggcc cggta chromosome
8 atgagatgaggcgataaaagaacgtcgcta aaacg chromosome
9 tactacttcaaggaattctatagaacctac tatat chromosome
10 gtaccacagtgccacatgttggcaattggc gagac chromosome
11 taaagctggtgaagcgattaacactgtacc aagta chromosome
12 atttcttcgttattagaaatataaaattgc gttgt chromosome
13 attttttatgattaagccatatggggttaa gcaag pRH223/240
14 aaagactgggatccaaaaaaatatggtggt tttga pRH243
15 attttcaaatgcataaaaactgtttctcaac gatat chromosome
16 ttttgtattggaatggcattttttgctatc aaggt chromosome
17 taaaacaggaccacttgtcatgtaagcttt aagtt pRH223/240
18 tgtatcttgtggtttcatctgtgctaacttt ggcag chromosome
19 agaggatgcagaacgtgcaatcttagctgc aagac chromosome
20 ttcaaacgagaataattatggcgttggttta ggtat chromosome
21 gcgaatacactcattaaaacaattgcatcc tgatt chromosome
22 tcttatcttgataataagggtaactattgc cgatg chromosome
23 caaataaaggtgcgttattaataacagtgc caggc chromosome
24 acaacagtacgccaaccagccatcagtcac ctcct pRH223

S6 1 cagctaacaatgccatgattggtcggctga gGGaG pRH223
2 tggtaaatttacagaagatgctgaagatgc tGGtG chromosome
3 gagtcagctaggaggtgactgatggctggt tGGcG pRH223
4 caaataagtctagacatattagctcgttatc aGGtG chromosome
5 acgaccttgttgcaacatagcgccccactc tGGtG chromosome
6 acatgttatgcatatcgtaagtgaagtcac aGGtG chromosome
7 atccgttctgcagaagagattgtttcttgc aGGcG pRH223
8 agatgcttgttgtgttgtttgtgttgatgc cGGtG chromosome
9 atccgttctgcagaagagattgtttcttgc aGGcG pRH223
10 agtttgggagtcaattatcggctttttaac tGGcG chromosome
11 aaaaagttatctcgtagacattacactggc tGGgG pRH245