TABLE 1.
Demonstrated IPP isomerase function in bacteria and genes (by gene bank identification numbers) related to IPP isomerase in cyanobacteria
| Organism | Type 1 | Type 2 | Source reference or databasea |
|---|---|---|---|
| Organisms with IPP isomerase function demonstrated: | |||
| Escherichia coli | + | 7 | |
| Bacillus subtilis | + | 26 | |
| Streptomyces sp. strain CL190 | + | 9 | |
| Staphylococcus aureus | + | 9 | |
| Cyanobacteria with genes related to type 2: | |||
| Anabaena (Nostoc) strain PCC 7120 | gi:17133727 (all4519) | Kazusa DNA Research Institute, Japan | |
| “Nostoc punctiforme” PCC 73102 | gi:23128293 | DOE Joint Genome Institute, USA | |
| Synechocystis strain PCC 6803 | gi:2829616 (sll1556) | Kazusa DNA Research Institute, Japan | |
| “Synechococcus elongatus” PCC 7942 | Draft genome prediction | DOE Joint Genome Institute, USA | |
| “Thermosynechococcus elongatus” BP-1 | gi:22295127 (tll1403) | Kazusa DNA Research Institute, Japan | |
| “Trichodesmium erythraeum” BP-1 | gi:23041526 | DOE Joint Genome Institute, USA | |
| Cyanobacteria lacking type 2-related genes: | |||
| “Gloeobacter violaceus” PCC 742 | Kazusa DNA Research Institute, Japan | ||
| Prochlorococcus marinus SS 120 | Genoscope, France | ||
| Prochlorococcus marinus MED 4 | DOE Joint Genome Institute, USA | ||
| Prochlorococcus marinus MIT 9313 | DOE Joint Genome Institute, USA | ||
| Synechococcus sp. strain WH 8102 | DOE Joint Genome Institute, USA |
a
Kazusa DNA Research Institute, Kazusa, Japan; DOE Joint Genome Institute, Walnut Creek, Calif.; Genoscope, Evry, France. USA, United States of America.